Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21590 233 / 2e-68 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 223 / 3e-68 Protein kinase superfamily protein (.1.2.3) AT2G16750 226 / 4e-67 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 224 / 1e-65 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G18910 217 / 2e-64 Protein kinase superfamily protein (.1) AT1G77280 221 / 7e-64 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G65530 213 / 2e-63 Protein kinase superfamily protein (.1) AT3G05140 209 / 7e-62 RBK2 ROP binding protein kinases 2 (.1) AT5G35960 206 / 2e-61 Protein kinase family protein (.1) AT5G10520 201 / 9e-59 RBK1 ROP binding protein kinases 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025103 [exp] 889 / 0 AT2G16750 238 / 7e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 246 / 3e-73 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 244 / 1e-72 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 234 / 2e-69 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 232 / 1e-68 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 219 / 1e-63 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 218 / 1e-63 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018959 [exp] 214 / 2e-63 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10035949 [exp] 209 / 1e-61 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140300 [exp] 557 / 0 AT4G35030 245 / 9e-75 Protein kinase superfamily protein (.1.2.3) Potri.007G102400 [exp] 237 / 2e-70 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 238 / 3e-70 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 235 / 2e-69 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 230 / 8e-68 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 225 / 5e-66 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 222 / 4e-65 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G011700 [exp] 214 / 5e-64 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.014G136300 [exp] 211 / 4e-63 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.006G173700 [exp] 215 / 7e-63 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023981 pacid=23160818 polypeptide=Lus10023981 locus=Lus10023981.g ID=Lus10023981.BGIv1.0 annot-version=v1.0 ATGCTGATGAGGGTTCTCCATACTTCTGCAAATCCGGGAGACAATGTGTTAGCAGTTCATATTCAAGAAGCATCTAGTAGTTTTGATCCAAACAGCTTTC ACATGCATGCAGATCTCTCTAAGTCCAAGCAGGTGGATTTTCTAGTTAAAGTTTGTGCAGGAGAATCCTACATTTCAGGATTAAGTGATCAAGTCCGCCT CAACTCTGCCACAGTCCTCGTTCTTGGTTGCAGTCGTCAATGGCCTAAAGAGTCGGTGGTCAAAGCTCTCTTAAAAAGTCTGCCTCCAACCTGCAGGCTC CTCATCATGAATAGTGCAGGAAAAACAATATTCCAGAGCCAGGGAACCTCACAACAGGGATCCAATTCTCCAGTTCTTAAACCCTCGTTGTCTGATAATA GTTATTTCTACCAGCCAAAAGTTGGGTCCCCTCAGTTGCAGAAATCGTTGACTACACCATCTTCATCGAATGACACCACAGTTGACAAAAAGGTATTTGA GGTATCAGATAACCTGGCAAAGAAAAATTTTCACAGGCTGATGCACTTACTAGCTACAGAGCCTATTAGACGTTTCACATGGGAAGAACTCAACTCTGCT ACTAATGGTTTCATTCCTGAACTGTTGATCGGAAAAGGTGGCTATAGTAAGGTGTATCATGGCACTCTTAGGGATGGTCAGGCTGTAGCAATCAAAGTTC TGAAGAGTACAAACTTAGAGGATCTTCTCCGCGAGGTAGAGATTTTATCCGGGTTAAGGCATGAAAACATAGTTCAGATAATTGGTTGCTGCGATGGTAA GGGGATGCATGCTGTGGTCTATAATCTGTTGGAGGGTAGTCTGAAACGAACATTTAAACATCTCAATTGGAATGAGAGAATGGGAGTTGCGATTGGAGTG GCAAAGGCACTTGAGTATCTTCATCATTCCTTCACCCCTCCACTAGTTCATAGAGACGTGAAGGCGTCCAATATCCTTCTTTCTGAGAACATGCAGCCTC AACTCTCAGATTTTGGATCAGCAATAAGGCTGGAAAAGGTGGACCAGATCCCAGAAAACGTGAAGCCATTTGAAGTCGTAGGGACATTCGGTTACTTAGC CCCTGAGTATGTGATGTATGGAAAAGTCGATGTGAAAATAGATGTGTACTCTTATGGAGTTGTGCTCCTGGAACTTATCACAGGGAAAGAAGCTATTCAA ACAAACCAGGAAAATAGTGAAAGCTTAGTATTGTGGCCTGTGCAGGCAAGATCTCTGCTGAGTTCTGGTTTATGTGACCGTTTGATTGATCCTCACCTCA ATGGAGATTACAACAAGGAAGAAATGGAATTTCTAGTATTCCTTTCAAGGCTCTGCCTCATACATTCATCTTCTCGGAGGCCATCAATGAAAATGGTAAA CTTTCTCCTGTATCCTCGTGTAGTTTTCTTCTCGTCCATGAACTCATTATGA
AA sequence Show only first row Show all	>Lus10023981 pacid=23160818 polypeptide=Lus10023981 locus=Lus10023981.g ID=Lus10023981.BGIv1.0 annot-version=v1.0 MLMRVLHTSANPGDNVLAVHIQEASSSFDPNSFHMHADLSKSKQVDFLVKVCAGESYISGLSDQVRLNSATVLVLGCSRQWPKESVVKALLKSLPPTCRL LIMNSAGKTIFQSQGTSQQGSNSPVLKPSLSDNSYFYQPKVGSPQLQKSLTTPSSSNDTTVDKKVFEVSDNLAKKNFHRLMHLLATEPIRRFTWEELNSA TNGFIPELLIGKGGYSKVYHGTLRDGQAVAIKVLKSTNLEDLLREVEILSGLRHENIVQIIGCCDGKGMHAVVYNLLEGSLKRTFKHLNWNERMGVAIGV AKALEYLHHSFTPPLVHRDVKASNILLSENMQPQLSDFGSAIRLEKVDQIPENVKPFEVVGTFGYLAPEYVMYGKVDVKIDVYSYGVVLLELITGKEAIQ TNQENSESLVLWPVQARSLLSSGLCDRLIDPHLNGDYNKEEMEFLVFLSRLCLIHSSSRRPSMKMVNFLLYPRVVFFSSMNSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21590			Protein kinase protein with ad...		Lus10023981 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	4.1	0.7989
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002192 [exp]	6.3	0.7523
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10003915 [exp]	6.5	0.6977
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	16.0	0.7424
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	17.0	0.7412
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	20.6	0.7422
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	23.2	0.7343
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012400 [exp]	24.8	0.7248
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	28.0	0.7290
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	32.3	0.7152

Compare expression of checked genes

Lus10023981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.