Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38430 653 / 0 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 500 / 2e-172 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 486 / 5e-166 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 439 / 7e-148 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G00460 397 / 5e-133 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT4G13240 385 / 9e-128 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT1G01700 383 / 2e-127 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT3G24620 374 / 2e-123 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G79860 369 / 2e-121 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT2G45890 363 / 5e-120 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025101 [exp] 1083 / 0 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 498 / 1e-171 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 492 / 2e-169 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10022601 [exp] 481 / 1e-162 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10021500 [exp] 479 / 8e-162 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10040248 [exp] 476 / 8e-162 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 466 / 4e-158 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 458 / 2e-155 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 447 / 6e-151 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140100 [exp] 774 / 0 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 758 / 0 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 573 / 0 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 559 / 0 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 495 / 3e-169 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 485 / 1e-165 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 479 / 3e-163 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 473 / 1e-159 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.002G159700 [exp] 400 / 2e-134 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 400 / 5e-134 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10023983 pacid=23160837 polypeptide=Lus10023983 locus=Lus10023983.g ID=Lus10023983.BGIv1.0 annot-version=v1.0 ATGGCGAGTTTGTCCTCCGACGATGAGCAGCAGAGCGAGAGGTGCGCCGGGAGCTACAGCTTGAGCGCCGACATCAGTGAGTCTGATAGCTGCAGCAGCT TCTCCTGCCGTCGATTCGACGCAGAAGGCGCTTCCAGCTCCATGACTTCCTCTCCTCGCCCTGGCCTCCCCGGAGGCGGCAGCGGCTTCTGTTTCTCCGC GCCGCCACCTCCAATGTTGATGCTGCCGGTCGTCGGTCGCAAGGATCTGGTCTGGGACGGCAAATCAAAGCGCGATGGCGATTTGTCCGAAGTTGAGATG ATGATGGAGAGATTCGCAAAGCTTCTCTTGGGGGAAGATATGTCAGGAAGTGGCAAAGGAGTCTGCACAGCACTAGCAATCTCTAACGCCATTACCAATC TCTCTGCAACTGTGTTCGGGGAGCTATGGAGGTTAGAACCACTGGCGACGCAGAAGAAGGCAATGTGGAGGAGAGAAATGGAATGGCTGTTATGCGTTAG CGATTCCATAGTCGAGCTGGTGCCTTCAATTCAGAAGTTCCCCGGAGGAGGGACCTACGAGATCATGGCGAGTCGTCCCAGGTCTGATTTGTACATGAAC TTGCCTGCGTTGAAGAAGCTTGATGCAATGTTGATAGGGATGCTCGATGGTTTCTGCGAGACCGAATTCTGGTACGTGGATCGAGGCATCGTTGTGGCAG AGGATGAGGAGCTTCGTCGTGATGTTTATCCCCCTGGTTTCTCTGGTGGTAGGCCTTCAATTCGGCAGGAAGAGAAATGGTGGCTGCCTTGTCCGAAAGT GCCACCCAATGGTTTGTCTGAAGACGCTAGGAAGAAGTTGCAGCAGTGTAGGGATTGTACCAATCAGATATTGAAGGCTGCCATGGCTATTAACAGTAGT GTACTTGCCGAGATGGAAATACCTTCACCGTACTTAGAGAGCTTACCGAAGAGCGGGAGATCTTGTCTGGGCGATATCATCTATCGATTTGTAACGTCAG AACACTTCTCAGCAGAAGCTCTTCTCGACAATTTGGATCTGACGACAGAGCATCATGCCACGGAAATAGCTAACAAAATCGAGGCAGCATTGCACGTTTG GAAGCGCAAGGACCAGAAGAAGCACAACAAAGGTCTTTCAAAAGGTCATAAACATGCATCGTTCTCTGGAATTAGTTCCAAGGCTCGTATCCACGATCAT CGACATTCCTTAGGTAGCAAGGTGAAAGGTCTCATCGTTACTAATGGTGAGAAAAAGTATGGCTTGGCTCAACGAGCTGAGACACTTTTACATGGTTTAA GGCTTCGCTTTCCTGGCCTCCCTCAGACTGCCCTAGACATGAACAAGATTCAGTACAATAAGGATGTAGGACAGTCGATTCTTGAAAGCTACTCGAGAGT GATGGAGAGTTTGGCGTTCAACATCATGGCGAGGATCGATGATGTACTCTTCGTAGACGACGCGACGAAGCAATGCGTTGCCGAAGAATCCGTTTCCCTT TTCAACAGAGGCGTTCTTCCCATTCAGAAGCGGATGTCCCCTAGCCCGTTCTCAATCCAACACAGTCCATTCACATCTCCATTCGGGACGCCGACTTTCT GCTCTTCCACTCCACTAGCCGGAAGCCCCGAAAGGGTAGTCCCATTGTCTAAGAGAAGCAACCACCTCCTCCTCGAGGTGTCTGATCGAAAACTGGGGTT TCCAGCAGAGTACGACAAGATCTGGTCTTACACTGGTAACCTAAGTGCGCGAAGAGTTTCTTCTGGAGACGCCCCAGAGAGAAACTGA
AA sequence Show only first row Show all	>Lus10023983 pacid=23160837 polypeptide=Lus10023983 locus=Lus10023983.g ID=Lus10023983.BGIv1.0 annot-version=v1.0 MASLSSDDEQQSERCAGSYSLSADISESDSCSSFSCRRFDAEGASSSMTSSPRPGLPGGGSGFCFSAPPPPMLMLPVVGRKDLVWDGKSKRDGDLSEVEM MMERFAKLLLGEDMSGSGKGVCTALAISNAITNLSATVFGELWRLEPLATQKKAMWRREMEWLLCVSDSIVELVPSIQKFPGGGTYEIMASRPRSDLYMN LPALKKLDAMLIGMLDGFCETEFWYVDRGIVVAEDEELRRDVYPPGFSGGRPSIRQEEKWWLPCPKVPPNGLSEDARKKLQQCRDCTNQILKAAMAINSS VLAEMEIPSPYLESLPKSGRSCLGDIIYRFVTSEHFSAEALLDNLDLTTEHHATEIANKIEAALHVWKRKDQKKHNKGLSKGHKHASFSGISSKARIHDH RHSLGSKVKGLIVTNGEKKYGLAQRAETLLHGLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKQCVAEESVSL FNRGVLPIQKRMSPSPFSIQHSPFTSPFGTPTFCSSTPLAGSPERVVPLSKRSNHLLLEVSDRKLGFPAEYDKIWSYTGNLSARRVSSGDAPERN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10023983 [exp]	0	1
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	10.4	0.8437
AT5G61390			Polynucleotidyl transferase, r...		Lus10019078 [exp]	14.1	0.7762
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	15.4	0.8443
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	15.7	0.8058
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	18.5	0.7896
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	19.8	0.8149
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	27.4	0.8046
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	29.8	0.8045
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	30.7	0.8143
AT1G43770			RING/FYVE/PHD zinc finger supe...		Lus10028603 [exp]	30.9	0.7981

Compare expression of checked genes

Lus10023983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.