Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 316 / 1e-104 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 214 / 5e-65 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G24040 129 / 1e-33 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT1G65770 122 / 4e-31 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT5G60060 115 / 2e-28 Protein of unknown function (DUF295) (.1) AT3G25750 110 / 5e-27 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17690 107 / 2e-25 SDC SUPPRESSOR OF DRM1 DRM2 CMT3, F-box family protein with a domain of unknown function (DUF295) (.1) AT2G26160 102 / 5e-24 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 100 / 5e-23 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65740 100 / 7e-23 UCL1 UPWARD CURLY LEAF1, Protein of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025100 [exp] 806 / 0 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10021517 [exp] 220 / 1e-67 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10012519 [exp] 160 / 5e-46 AT2G17030 115 / 2e-29 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022618 [exp] 143 / 2e-39 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10041838 [exp] 139 / 6e-37 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10028385 [exp] 123 / 5e-31 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10022650 [exp] 109 / 1e-26 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10029350 [exp] 50 / 1e-06 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10007081 [exp] 44 / 0.0003 AT5G55150 45 / 6e-05 Protein of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140000 [exp] 513 / 0 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 502 / 8e-177 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 166 / 5e-47 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.002G014500 [exp] 156 / 2e-43 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105200 [exp] 152 / 9e-42 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G277400 [exp] 145 / 5e-39 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105000 [exp] 137 / 4e-37 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 135 / 8e-36 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.004G134900 [exp] 74 / 5e-14 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 73 / 6e-14 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295) CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023984 pacid=23160649 polypeptide=Lus10023984 locus=Lus10023984.g ID=Lus10023984.BGIv1.0 annot-version=v1.0 ATGGCGGACTGGTCCCAGATCCCTCACGATCTCCTCGAAACAATAACGAAGCGCATCGACACGTCCACCGACCTCCTCCGATTCCGCTCCGTATGCAGCA CATGGCGATCCTCCGTCGTCCCAAGGGCCCGCCGTTTATCCAGCGCGTTCCAAATCCTTCCTAACGACGGCATCGCCAACACCTCCTTCGGTTTCTACCT CTCCAAGCGGATCGTTTACCTCATCGGACTCCCCAATTCGCCGCATCTCGGAAACTGGCTGGTTAAGATCGAGGAAGACGTCCCCGAGAGGAAGCGACTC GTCAATCCTCTCTCCAGGTGTCCTTTGAAATCCGAAGCTTTGCCTAAGAATTTCCCTAGGATGTTGGATTTGAGGAACGTTATGGTGAAGGAGTTGGCAC AGGAGTATGTGCTGCATCACATTAGTTATAGGCCGAATGCTACTTCGTTCACTGATGCTGGGAATTTGTACATGGAGAAGGTGGTGATGATGTGGCTGGA GGATGAGCTGAATTCCAATACTGAATTCAGCGAATTCATGCTTCTCACGATCCATGTTTCTGGAAAGTTGGCGATTTTCAAGAGTGGGGATAGAAGGTGG ACGATCATAGGTGAAATGGATTCACCTTACGATGATGTAGTTGTTCATAAGGGGAAGTTGTTCGGTGTGGATAACACCGGGAAGGTTGTGAGCGTCGGTA AGGATGCGGATTTGACAGTAGCTGCTAACCCTGTGTTTGGTGGTGACAAGAAGTATTTAGTCCAGTCGAAGGGCGAATTGTTGTTGGTTGATATGTATCT GAGTATCGACACTGGGGATGATAATTCGGATACAGGGGAGGAGTTCATGGAGCATCTTGCTCAGTATATGAGGGAGAGGACGGTGAGGTTCAAAGTCTAT AAGTTGGATGAAGAAGAGAAGACTTGGGTGGAAGTTGGAAGCTTGCCGGATACTGTGTTGTTTCTCGGGGACGATTCTGCATTTGCTGCATCGTCTTCGG ATCTCTATGGTTGCAATGGGAATTGTATATTTTTTGTGGATAATTTCTTTTACGCGAGAGAGATCGGTGGCCTAGGTAAGGAAGACGATGGAATGTGGGC TGCTCGAGATATAGGTGTGTTCGAGCTGGAAACGGGATGTATAGGGCCATTGGTAAACTATCCTGAGTACTACAAGATTTTCTGGCCACCTCCTGGTTGG CTGCTTACATCCCAAGAGGTAACTGCTATTGCTAGTTCCTTTTCAAGTTTGAAAGACTGCTTCTTGCATGAACAAATATGTCGTTAA
AA sequence Show only first row Show all	>Lus10023984 pacid=23160649 polypeptide=Lus10023984 locus=Lus10023984.g ID=Lus10023984.BGIv1.0 annot-version=v1.0 MADWSQIPHDLLETITKRIDTSTDLLRFRSVCSTWRSSVVPRARRLSSAFQILPNDGIANTSFGFYLSKRIVYLIGLPNSPHLGNWLVKIEEDVPERKRL VNPLSRCPLKSEALPKNFPRMLDLRNVMVKELAQEYVLHHISYRPNATSFTDAGNLYMEKVVMMWLEDELNSNTEFSEFMLLTIHVSGKLAIFKSGDRRW TIIGEMDSPYDDVVVHKGKLFGVDNTGKVVSVGKDADLTVAANPVFGGDKKYLVQSKGELLLVDMYLSIDTGDDNSDTGEEFMEHLAQYMRERTVRFKVY KLDEEEKTWVEVGSLPDTVLFLGDDSAFAASSSDLYGCNGNCIFFVDNFFYAREIGGLGKEDDGMWAARDIGVFELETGCIGPLVNYPEYYKIFWPPPGW LLTSQEVTAIASSFSSLKDCFLHEQICR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	0	1
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10028622 [exp]	2.0	0.8795
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	2.2	0.8350
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	2.8	0.8405
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	3.0	0.8448
AT1G05940		CAT9	cationic amino acid transporte...		Lus10028195 [exp]	4.6	0.8215
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	4.9	0.8152
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	5.1	0.8690
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	7.2	0.8084
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	8.4	0.8115
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	15.2	0.7685

Compare expression of checked genes

Lus10023984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.