Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38440 1183 / 0 IYO MINIYO, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025099 [exp] 2887 / 0 AT4G38440 1216 / 0.0 MINIYO, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139900 [exp] 1597 / 0 AT4G38440 1222 / 0.0 MINIYO, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08621 [flax] [poplar] RPAP1_N RPAP1-like, N-terminal PF08620 [flax] [poplar] RPAP1_C RPAP1-like, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10023985 pacid=23160763 polypeptide=Lus10023985 locus=Lus10023985.g ID=Lus10023985.BGIv1.0 annot-version=v1.0 ATGGAGAAGGCAGTGAAGACCCAAGTTCGCAAGAAAGCTGCAACCGCTTCAACGACTATGAAAAACTCAGGGGAGAAGAAACCCGGAGTTTTTGGAGTTA ACACAGTGGAAATCGGAGGTGGCGTAGCAGCACCATCGTTCCTAATTGGTGGCATAGTCGAGAAAGGTATTTCAGAAACCACACCGAACAAGCCGATTCG GCCTCCTAACCCCTCCATTTTCCCCTTTCCCGTCGCCCGCCACCGTGCTCATGGACCGTACTGGAATGCTTTGACAAGCAAGAAGGATGATAATGAAGCA GGAGAAGGGGATGGTGATAATGATCCTACTGATTTTAATCCGATATCAGCTTTTGCAAACCCGTTAGAGAGGAAGGAGAGGAAGGGTTTGGACCTTAGCC GTTGGAAAGAGGATGATAAGAGGCAAGAGAATGGATTTAGTGGAAAGAGTAAGAAGGATGTCAAGGCTGTTGATGATGATAATAGCAGGAGCTCCTTTTC TGAGGTTCCTATGGAAGTAGACGAGACTCTTACTTCAGCAGCATGCATGGGAACTGATAGCCTCCATCGGTCCTATGATCGAAGGGACCTTGGTGACATT AGTTCTCATTCGCAGAAAGGAGAAACCGACTCTACGGAAGAACAGCCTATTAGAGTGAAGAAGATGAATCCTACGTTCTCAGGAGCTTCGAATGGAGTTT CTAGTTTTGGAGTTGCACAAGGATCTATGTCACTTGAGAGTGAGATTGATGCCGAGAACCATGCACGGATACAGAATATGTCACAGGAAGAGATTGCAGA AGCGCGGGCCGAGTTAATGGAGAAGATGAATCCTTCGCTGCTGAACTTACTGAAAAGGCGAGGTCAGGAAAAGTTTAACAAGCAGAATCTCTCTGAGTCG GATGTGCCTACAAAGAACGAACCCGCTAATGGTCCACCACACAAAGATTCCAGTGTGCATTCACATGTAGCAAATGGTGGTACTGATACCGTGAAAACCC GTAACTCGATAAATGCAGACCCGGTTACACCTAACAGCTTGGAACATGATTTAGATCCTGCAAGCAGCAATTCATGGAATACTTGGAGTGAGAGAGTGGA GGCTGCTAGAAGATTAAGATTTTCTCTCGAGGGGGATGTCATCTCCGCAGATTTTAAGACTGGTTGCACGCCCAATGAAACTTGCAATGCAATTGATAGT GTTGGTGAACGTGACTTTCTAAGAGCTGAGGGTGATCCTGGAGCTGCTGGTTACTCTATTCAAGAAGCTGTGAAATTGACGAGAAGTGTGGTACCGGGAC AACGAGGCCTTGCATTGTATCTTCTCGCATCTGTTCTTGACAAAGCAATCCATAATATTAGATTGAAAGAGGTTGGGAATACTGTGAGAAACGCTAAGCA ATCAGACAAGTTCACTGATTGGGAGGCTGTTTGGGCTTATGCCCTTGGCCCTCAACCCGAACTTGTCTTGTCTTTAAGAATGTGTCTTGATGACAACCAT AGTTCAGTAGTTGTAGCATGCACAAAGGTCATTCATTCTGTGCTGAGTTATGACTCGAATGAAAAGGTCTTTCAGATATCAGAGAAATTAGGAACTTATG GCAAGGACCTCTACACAGCCCCTGTATTTCGAAGCAAACCAGAGATTAATGGTGGCTTCCTTAGCGGTGGTTTCTGGAAGTATAGTGCCAAACCATCTAA TATGCTAGCTTATGCCGAGGACATTATGGATGACGACAATGAAGAGGAACAGACAATTCAGGATGACATCGTTGTTGCCGGTCAAGATTTTGCTGCAGGT TTGGTAAGAATGGGTATTCTTCCAAGGATGTCTTACCTTTTGGAGGCCAATCCTACAGATGCTTTGGAAGAGTGTATATTATCGATACTTGTTACAATAG CAAGGCATTCTCCAACATGTGCTACAGCAATTATGAGGTGTGAAGGTCTTGTGAAGACGGTTGTTAAAAGGTTTAGAACGGACAACAATATGGAAATTCG TCCTTCTAAGATCAAGTCCATTCGGCTTATGAAGGTCCTTGCTCAATCAGGGAAGGATAACTGTATGAAGTTTATAAAGGACGAGTCTTTTAATGGTATG ACACAACACCTGTACTGGTATACTTCCTCCCTTGATGAATGGGTAACATCGGGGAAGCAGAGCTGCAGGCTTTCATCTGCGTTGAGGGTTGAGCAGCTGC AGTTTTGGAAGGTTTGCATCCACTATGGATTTTGTATATCAGATTTTGCTAATATCTTTCCAGCCTTGTGTTTTTGGTTGACTCCACCTACTTTTGGGAA ACTTGAGGAGATGAATGTCGTTGGTGAATTTGCTTCCATTTCAAAGGAAGCATATCTTGTGTTGGAAGCTTTGGCTAGAAAGCTGCCAAACTTCTATATG CAGAAGGGTCAGCACAGTAAAAAATCAGATGTTTTTATGGGGGAACATGAAACTTGGTCATGGAGTTATGTCACTCCAGTTGTTGAATTAGCATTAAAGT GGATAACGTGGAAAAGTGATCAACAAATATCTGAACTCTTCGAATCAGTGAGGGGACCGCAGAGTGAGTCTGAAAACCAGGATTTATCTATGACGTCGTT GCTATGGGTGTACTCTGCTGTCATGCAGATGCTTTCAACTTTACTTCTCAAAGTAAAACCAGAAGATACCGTGACATCTGAAGAAAATGGCTTTAATATT CCATGGCTGCCAGAGTTTGTTCCCAAGATTGGACTTGAAATCATAAGGAACGGGTTCTTGGGCTTTGGTGATGGCGATTCTGTAAAAGAAGGAGATAATT TTGGAGTTGGTAGCTCGTTTGTTTCGGAATTGTGTCGATTGAGAAAGACAAACAAACTCGAAGTGTCGTTAGCTTCGGTTTCTTGTCTGAATGCCATACT ACTACTTGGACGCTCCGTTGATGAATTAATCCAATCAGCCAGGCGTGGGATTGATCAACCCACTTCACAAGGATACAGCTCCTCGAGTGAAGGCAAAGTA CTTGTGGAAGGAATACTGAAGCTATCCATGGCTGAGCTTAGATGTATGCTTGATATATTTACTAAGTTTGCCGCCCAAGAGTTTGAGCTTGTGCAATCAA TCGATGTATTGGGTGGAGGAGGACCTGCCCCAGGAGTTGGACTCGGATGGGGTGCCTCCGGTGGAGGATTTTGGTCGTTGGCCGTTTTGTTAGCTCAGGC TGACTCGAAATTGCTAATCGACTTGCTCGATATCTTCCAGCAAGAATCTAGCACAGATTTGGTTACGGACAGAGAAATGGTCTCCACCGCTCACAGGATC AATTCTGTACTAAGAGCGTGCTTAACTGTTGGACCTAGAGATACAGATACTGCAGAGAAGGCTCTGGATTTCTTACTCCAGCCACCTGTTCTTAATTATC TTGATGCATGTAGACAACGCTTATCGCAGTCAAACAATGGAGGAAGATCACCTTTACATCCACACACCGAGGAGTATCAACTGTTTAGTAAGACACTAGC CTCTCATTTCCGAAGCAGATGGTTATCTGTGAAGACGAAATCAAAGCCTCTGGATGGGAATAAGTCATCTAGCAAATCTGAGAAGGCTATGCCTTTAGAG ACCATTCACGAGGAGGACACGTGCGTGTCATCGTCGAGGAATATCACGAGGCATGACCGAAGCTGCACGTCTTTCACCACCGAGTGGGCTCACCAGAGAT TGCCTCTTCCTATGCATTGGTTTCTGAGTCCAGTGTCAGAGAAAAAGAACAGTGTCGATACCCTTGAAGTTATCAAGGCCGGACTCTTCTTTCTTCTTGG CATCGAAGCAATGTCTAGTCTCCTACCTAACGATGCCAAGTCTCCAATTCGCGATACACCTTTAGTTTGGAAACTGCATTCTTTATCAGTTGCATTACTT ATTGGAATGGGCGTATTAGACGATGACAGAAGTAAAGAGGATTTCGAGGTTTTGCAGAACCTCTATGGCCGGGTTCTTGATGAAACCAGGTCAATCAACA CCACTCGCGTGGAATTTTTGAGGTTCAAATCAGAGGTTCATGAAACTTACTCCACATTTCTGGAAGCTCTGGTGGACAAATTTGCTGCTGACTCCTATGG CGATCTGATTTTCGGTAGACAGCTTGCTATATTTTTGCATCGTTGCACCGAAACACCAGTCAGACTTGCTGCCTGGACTGTGCTCAGCACCTCTCGTGTT CTTGAGCTTCTGCCTCCATTGGAGAAGTGTGTCGGTCAAGAAGATGGATACCTTGAACCTATAGAGAACGATGAAGGTATTCTGGAAAGTTACGTGAAAT CATGGATATCCGGTGCTCTAGACAGAGCTGCAACTAGGGGATCAATGACATTCACACTTTCTCTACACCACCTTTCATCTTTCATTTTCGGTCCTCATCC CAACGACACCATAACTCTCCGAAACAAGCTCGCAAGATCACTCATTCGCGACTACTCACAGAAACCGGATCACCAGGGTATGATGTTGGAGCTGGTAAAA TACAGCAAACCAAGTCACGAAAACAACTGTCCGATTCCCAAACGTTTCGAAGTGCTTGCAGAAGCTTGCGATGGAAACTCTTCTCTACTGTCTGAAGTTG AGAAACTGAAGTGTGCTTTAACCAGGTAG
AA sequence Show only first row Show all	>Lus10023985 pacid=23160763 polypeptide=Lus10023985 locus=Lus10023985.g ID=Lus10023985.BGIv1.0 annot-version=v1.0 MEKAVKTQVRKKAATASTTMKNSGEKKPGVFGVNTVEIGGGVAAPSFLIGGIVEKGISETTPNKPIRPPNPSIFPFPVARHRAHGPYWNALTSKKDDNEA GEGDGDNDPTDFNPISAFANPLERKERKGLDLSRWKEDDKRQENGFSGKSKKDVKAVDDDNSRSSFSEVPMEVDETLTSAACMGTDSLHRSYDRRDLGDI SSHSQKGETDSTEEQPIRVKKMNPTFSGASNGVSSFGVAQGSMSLESEIDAENHARIQNMSQEEIAEARAELMEKMNPSLLNLLKRRGQEKFNKQNLSES DVPTKNEPANGPPHKDSSVHSHVANGGTDTVKTRNSINADPVTPNSLEHDLDPASSNSWNTWSERVEAARRLRFSLEGDVISADFKTGCTPNETCNAIDS VGERDFLRAEGDPGAAGYSIQEAVKLTRSVVPGQRGLALYLLASVLDKAIHNIRLKEVGNTVRNAKQSDKFTDWEAVWAYALGPQPELVLSLRMCLDDNH SSVVVACTKVIHSVLSYDSNEKVFQISEKLGTYGKDLYTAPVFRSKPEINGGFLSGGFWKYSAKPSNMLAYAEDIMDDDNEEEQTIQDDIVVAGQDFAAG LVRMGILPRMSYLLEANPTDALEECILSILVTIARHSPTCATAIMRCEGLVKTVVKRFRTDNNMEIRPSKIKSIRLMKVLAQSGKDNCMKFIKDESFNGM TQHLYWYTSSLDEWVTSGKQSCRLSSALRVEQLQFWKVCIHYGFCISDFANIFPALCFWLTPPTFGKLEEMNVVGEFASISKEAYLVLEALARKLPNFYM QKGQHSKKSDVFMGEHETWSWSYVTPVVELALKWITWKSDQQISELFESVRGPQSESENQDLSMTSLLWVYSAVMQMLSTLLLKVKPEDTVTSEENGFNI PWLPEFVPKIGLEIIRNGFLGFGDGDSVKEGDNFGVGSSFVSELCRLRKTNKLEVSLASVSCLNAILLLGRSVDELIQSARRGIDQPTSQGYSSSSEGKV LVEGILKLSMAELRCMLDIFTKFAAQEFELVQSIDVLGGGGPAPGVGLGWGASGGGFWSLAVLLAQADSKLLIDLLDIFQQESSTDLVTDREMVSTAHRI NSVLRACLTVGPRDTDTAEKALDFLLQPPVLNYLDACRQRLSQSNNGGRSPLHPHTEEYQLFSKTLASHFRSRWLSVKTKSKPLDGNKSSSKSEKAMPLE TIHEEDTCVSSSRNITRHDRSCTSFTTEWAHQRLPLPMHWFLSPVSEKKNSVDTLEVIKAGLFFLLGIEAMSSLLPNDAKSPIRDTPLVWKLHSLSVALL IGMGVLDDDRSKEDFEVLQNLYGRVLDETRSINTTRVEFLRFKSEVHETYSTFLEALVDKFAADSYGDLIFGRQLAIFLHRCTETPVRLAAWTVLSTSRV LELLPPLEKCVGQEDGYLEPIENDEGILESYVKSWISGALDRAATRGSMTFTLSLHHLSSFIFGPHPNDTITLRNKLARSLIRDYSQKPDHQGMMLELVK YSKPSHENNCPIPKRFEVLAEACDGNSSLLSEVEKLKCALTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	0	1
AT4G10930			unknown protein		Lus10032402 [exp]	1.0	0.9046
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	2.4	0.8656
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	6.9	0.7701
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	6.9	0.8369
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	7.1	0.7790
AT1G17450			B-block binding subunit of TFI...		Lus10022088 [exp]	8.7	0.7584
AT1G27900			RNA helicase family protein (....		Lus10036991 [exp]	8.9	0.7338
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	12.2	0.8159
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	12.5	0.8075
AT3G58470			nucleic acid binding;methyltra...		Lus10005597 [exp]	12.5	0.6704

Compare expression of checked genes

Lus10023985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.