Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 323 / 6e-109 O-methyltransferase family protein (.1) AT4G35150 273 / 7e-90 O-methyltransferase family protein (.1) AT1G77520 174 / 5e-51 O-methyltransferase family protein (.1) AT5G54160 172 / 2e-50 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 160 / 7e-46 O-methyltransferase family protein (.1.2) AT1G63140 146 / 2e-40 O-methyltransferase family protein (.1.2) AT5G53810 145 / 4e-40 O-methyltransferase family protein (.1) AT1G33030 145 / 4e-40 O-methyltransferase family protein (.1) AT3G53140 143 / 2e-39 O-methyltransferase family protein (.1) AT1G77530 137 / 4e-37 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025098 [exp] 674 / 0 AT4G35160 343 / 6e-117 O-methyltransferase family protein (.1) Lus10023987 [exp] 405 / 5e-141 AT4G35160 325 / 3e-109 O-methyltransferase family protein (.1) Lus10025097 [exp] 224 / 1e-72 AT4G35150 183 / 2e-57 O-methyltransferase family protein (.1) Lus10033656 [exp] 214 / 1e-66 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 209 / 2e-64 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10015311 [exp] 196 / 2e-59 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10032304 [exp] 183 / 1e-54 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10039744 [exp] 177 / 4e-52 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1) Lus10017691 [exp] 176 / 1e-51 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139700 [exp] 413 / 9e-145 AT4G35160 363 / 1e-124 O-methyltransferase family protein (.1) Potri.009G139800 [exp] 379 / 2e-131 AT4G35160 343 / 4e-117 O-methyltransferase family protein (.1) Potri.019G102900 [exp] 265 / 1e-86 AT4G35160 242 / 3e-77 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 231 / 2e-73 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G136300 [exp] 227 / 9e-72 AT4G35160 246 / 8e-79 O-methyltransferase family protein (.1) Potri.013G141301 [exp] 227 / 1e-71 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G143800 [exp] 227 / 1e-71 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 212 / 9e-66 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 207 / 4e-64 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 207 / 5e-64 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10023986 pacid=23160838 polypeptide=Lus10023986 locus=Lus10023986.g ID=Lus10023986.BGIv1.0 annot-version=v1.0 ATGAGAGATGATCAAAAGCAAGAAGAGGAAGAGGCTGGAGTTGAGATATGGAGCTATGTGTTTGGCTTCACTAAGATGGCAGTTGTCAAATGCGCCATCG AGCTAGGCATAGCCGACGCAATCGAAGACAATACCCCTATACCGCTTGGTCAACTCTCGTCAATCCTAGGCTGCGACCCGCCATCCCTCTCTCGAATCAT GCGGTTCTTAGTCCACCACCGCATTTTCAAAGAGAAGACCCTCAAAGAAGATCATGACTCTGATACCACCGTGGGATATGTCCACACCCCCCTCTCTCGT TTCCTAATCAGGCAACGAGAGGGGGGCAACAATTCGAGCCTGGCGGACTTCATCCTTTTCGAGAGCAACTATGTCATGCTGAAGCCATGGCTGTTCCTCA GCCCTCGAGTCCGGGCAGGCACTGCCTGCCCGGCATTCGAACAGGCTCATGGGGAGGATGTGTGGAAATACGCTGAGGGAAATCCGGGGTTTAGCGGGTT CATCGATGATGCAATGGCTTGTAATGCTAGGTTGGCCGTCCCCGCCATTGTTCGAGGTTGTTGCCCTAGCTTGTTTGATGGAGTCAAGACCTTGGTTGAT GTTGGTGGTGGGAATGGCACAGCTCTGAAGTTGTTTGTTGAGGCATGTCCTTCCATTAAAGGGATCAACTATGATCTTCCACATGTTGTGTCCATGGCAC CTCAAATTGAAGGTGTCACGCATGTTGGTGGTAACATGTTCCAAAGCATCCCAAGAGCCGATGCCGCCTTCCTCATGCAAGTTCTACACGACTGGAACGA CGAGGATTGCATACGAATCCTAACGAAATGCAGAGAAGCGATCCCGATGGAAGGGAAAGTGATAATCGCGGAGGCGGTGGTGGAGGAAGAGAAGAATGGG GAGCTTGAATATGCAAGGCTGATGCTTGACATGGTGATGATGGCTCATACAAACAGTGGGAAAGAGAGGAACTTGAAGGAATGGGAATACATTCTTAACC AAGCCGGGTTTAGCCGAGTGACCGTGACTCGAATCAAAGCGGTTCAATCCATCATTCAGGCCTTTCCTTGA
AA sequence Show only first row Show all	>Lus10023986 pacid=23160838 polypeptide=Lus10023986 locus=Lus10023986.g ID=Lus10023986.BGIv1.0 annot-version=v1.0 MRDDQKQEEEEAGVEIWSYVFGFTKMAVVKCAIELGIADAIEDNTPIPLGQLSSILGCDPPSLSRIMRFLVHHRIFKEKTLKEDHDSDTTVGYVHTPLSR FLIRQREGGNNSSLADFILFESNYVMLKPWLFLSPRVRAGTACPAFEQAHGEDVWKYAEGNPGFSGFIDDAMACNARLAVPAIVRGCCPSLFDGVKTLVD VGGGNGTALKLFVEACPSIKGINYDLPHVVSMAPQIEGVTHVGGNMFQSIPRADAAFLMQVLHDWNDEDCIRILTKCREAIPMEGKVIIAEAVVEEEKNG ELEYARLMLDMVMMAHTNSGKERNLKEWEYILNQAGFSRVTVTRIKAVQSIIQAFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10023986 [exp]	0	1
					Lus10007009 [exp]	1.0	0.9560
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	2.4	0.9523
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10026333 [exp]	3.9	0.9124
					Lus10007012 [exp]	4.5	0.9172
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	4.5	0.8990
AT5G01790			unknown protein		Lus10029060 [exp]	4.7	0.8967
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	7.2	0.8660
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	8.5	0.9081
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	11.1	0.9272
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	13.0	0.9042

Compare expression of checked genes

Lus10023986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.