Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 322 / 3e-108 O-methyltransferase family protein (.1) AT4G35150 277 / 1e-91 O-methyltransferase family protein (.1) AT5G54160 195 / 6e-59 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 182 / 8e-54 O-methyltransferase family protein (.1) AT1G51990 177 / 3e-52 O-methyltransferase family protein (.1.2) AT1G63140 169 / 6e-49 O-methyltransferase family protein (.1.2) AT5G53810 164 / 4e-47 O-methyltransferase family protein (.1) AT3G53140 159 / 4e-45 O-methyltransferase family protein (.1) AT1G77530 157 / 2e-44 O-methyltransferase family protein (.1) AT1G33030 152 / 1e-42 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025098 [exp] 426 / 2e-149 AT4G35160 343 / 6e-117 O-methyltransferase family protein (.1) Lus10023986 [exp] 421 / 3e-147 AT4G35160 338 / 6e-115 O-methyltransferase family protein (.1) Lus10025097 [exp] 268 / 6e-90 AT4G35150 183 / 2e-57 O-methyltransferase family protein (.1) Lus10017699 [exp] 231 / 1e-72 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10033656 [exp] 229 / 5e-72 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10039744 [exp] 214 / 3e-66 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1) Lus10033655 [exp] 204 / 2e-62 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1) Lus10032304 [exp] 202 / 9e-62 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10038331 [exp] 206 / 2e-61 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139800 [exp] 402 / 1e-140 AT4G35160 343 / 4e-117 O-methyltransferase family protein (.1) Potri.009G139700 [exp] 399 / 4e-139 AT4G35160 363 / 1e-124 O-methyltransferase family protein (.1) Potri.019G102900 [exp] 267 / 5e-87 AT4G35160 242 / 3e-77 O-methyltransferase family protein (.1) Potri.013G136300 [exp] 261 / 1e-84 AT4G35160 246 / 8e-79 O-methyltransferase family protein (.1) Potri.013G141301 [exp] 260 / 2e-84 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G143800 [exp] 260 / 2e-84 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 246 / 7e-79 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 244 / 6e-78 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 227 / 3e-71 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 221 / 4e-69 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10023987 pacid=23160735 polypeptide=Lus10023987 locus=Lus10023987.g ID=Lus10023987.BGIv1.0 annot-version=v1.0 ATGGTTTCAAGCTTGATCAAGAGAGAAGAAACCACAGAAGACGATGCCGCCTCCCTCGAGGTTGAGCTATGGAGCTATGCTTTGGGGTTTACAAAGATGG CTGTTGTCAAATGTGCCATTGAGCTTGGCATTGGTGATGCCATCCATTCCCACAACCCTTTGACACTCTCCCAACTCGCCTCCAGTCTAGGCTGCGATCC GTCCCTCCTCTTTCGAGTCATGCGGTTCTTGGTGCACCACCGCATTTTTCAGGAAAAATCTGTCGATGGCACCTTTGGATACGTACATACTCCCCTCTCC CGTCGCCTCCTCACCCGTCAAGATGGTAAGACCATGATTGATGTCCTCCTACTCGAAAGCAGTCCAGTCATGCTAGCTCCATGGCACTACCTAAGCGCCA ACGTCAAGTTAACGAACGACCCGAAGCCTCTTCCATTCCAGCAGGCTCACGGAAAGAGCCTGTTCGAGTATACAGGGACGAATCCGGAACACAGTAAGCT GTTCGACGACGCGATGTCAAACATCGCCAAAACGACGGTTCCAGCAATAGTCGAAGGCTGCCCTGATTTGCTAGACGGGCTGAAAACTCTGGTTGATGTT GGTGGTGGGAATGGCACCGCGACGAGATTGTTGGTGAAGGGGTTTCCTTGGATTCATGGGATTAACTTTGATCTCCCACATGTTGTCAAAGTGGCACCTC AAATTGAAGGTGTTAAACATGTTGGCGGTGACATGTTTGAGCGTGTTCCAAAAGCTGATGCTGTCCTCATCATGCAAGTTCTGCACGACTGGAACGATGA AGAGTGCATCGAGATACTGAAGAGATGCAGAGAAGCCATAATCAGTCAAGAGAATGGCGGCGGGGGGGGGGGGGGAAGTGGGAAGGTGATAATAGTGGAA GCAGTGGTAACGGATGAAGGGAGAGAAGTCGAGGAGTTTGAGCAAGTGAGGCTGATGCTTGACATGGTGATGATGGCTCATACCACAACAGGAAAAGAGA GAACTCTGAAAGAGTGGGAACATGTTCTTCATCAAGCTGGGTTTATCAGAGTTACAGTCACACGCATCAAGGCTCTTCAGTCTGTTATTCAAGCCTTTCC TGCTTGA
AA sequence Show only first row Show all	>Lus10023987 pacid=23160735 polypeptide=Lus10023987 locus=Lus10023987.g ID=Lus10023987.BGIv1.0 annot-version=v1.0 MVSSLIKREETTEDDAASLEVELWSYALGFTKMAVVKCAIELGIGDAIHSHNPLTLSQLASSLGCDPSLLFRVMRFLVHHRIFQEKSVDGTFGYVHTPLS RRLLTRQDGKTMIDVLLLESSPVMLAPWHYLSANVKLTNDPKPLPFQQAHGKSLFEYTGTNPEHSKLFDDAMSNIAKTTVPAIVEGCPDLLDGLKTLVDV GGGNGTATRLLVKGFPWIHGINFDLPHVVKVAPQIEGVKHVGGDMFERVPKADAVLIMQVLHDWNDEECIEILKRCREAIISQENGGGGGGGSGKVIIVE AVVTDEGREVEEFEQVRLMLDMVMMAHTTTGKERTLKEWEHVLHQAGFIRVTVTRIKALQSVIQAFPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	0	1
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	1.0	0.9650
					Lus10042813 [exp]	1.4	0.9569
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	2.2	0.9315
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	2.4	0.9541
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	3.5	0.9492
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	4.2	0.9299
AT1G67110		CYP735A2	"cytochrome P450, family 735, ...		Lus10006246 [exp]	4.5	0.9155
					Lus10028788 [exp]	5.3	0.9291
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	6.7	0.9263
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10007696 [exp]	7.5	0.9109

Compare expression of checked genes

Lus10023987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.