Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17020 476 / 2e-161 F-box/RNI-like superfamily protein (.1) AT1G55590 169 / 3e-45 RNI-like superfamily protein (.1) AT2G25490 77 / 1e-14 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 64 / 1e-10 EBF2 EIN3-binding F box protein 2 (.1) AT1G77000 60 / 1e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 60 / 2e-09 SKP2A F-box/RNI-like superfamily protein (.1) AT5G27920 59 / 7e-09 F-box family protein (.1) AT5G23340 57 / 1e-08 RNI-like superfamily protein (.1) AT2G06040 51 / 2e-06 unknown protein AT3G58530 47 / 2e-05 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012518 [exp] 541 / 0 AT2G17020 548 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10025093 [exp] 273 / 4e-89 AT2G17020 216 / 5e-67 F-box/RNI-like superfamily protein (.1) Lus10025094 [exp] 249 / 4e-80 AT2G17020 152 / 8e-44 F-box/RNI-like superfamily protein (.1) Lus10022652 [exp] 102 / 1e-24 AT2G17020 102 / 1e-25 F-box/RNI-like superfamily protein (.1) Lus10013444 [exp] 76 / 2e-14 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 74 / 7e-14 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10002913 [exp] 70 / 2e-12 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 69 / 8e-12 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 68 / 1e-11 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139500 [exp] 664 / 0 AT2G17020 638 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.004G179571 [exp] 618 / 0 AT2G17020 665 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G169800 [exp] 166 / 3e-44 AT1G55590 617 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 68 / 9e-12 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 66 / 4e-11 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 64 / 2e-10 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 63 / 3e-10 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 62 / 1e-09 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G195800 [exp] 59 / 4e-09 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.006G238300 [exp] 59 / 5e-09 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023988 pacid=23160810 polypeptide=Lus10023988 locus=Lus10023988.g ID=Lus10023988.BGIv1.0 annot-version=v1.0 ATGGCGTCCACCGGCGAGGGGGGCGGAGCAAACGAAGCAGAAGGGGAGAGATTGGATCAGATGCCGGCGGCGCTCCTCTGCACAATAATGTCGAACCTCG ACGTGGGTTCCATTTGCTCCATCGCCTCAACTTGCAGAGCCTTCAGAGCATCCGCTTCTCATCTCTTCGGTTTCATCCCCAACTTCCACCTCCTCGAGAT TGCGCTTTCAATTGATTTACTGAGTCCTCTGTTGCCACCCAATCCTTATCTCAGAAGCTTGAAGCTTGACTGCGAGCGGCTAGATGATGCGGCCATCAGC TTTGTAGCTCAGCCTTCGTTGCAGGAGTTGTGTGTGCATAACTGCACAGATTTCAGTGGGAAGTTGCTGTCTGAGATTGGTGGGAAGTGTCCAGATTTGA GGTGTCTATACTTGGGTTCAGTGGCTGAGAAAAGAGGCCGAGCCATTCATATATCTGATTTGGAGGAGTTACTCAGTGGTTGCAGGCAGTTGGAAGCTCT TGTCTTGATGTTCGATGTCTCGTTGTTTCTTCGTAACAATTTTACTCGAGTTTGGGCACTGGCTTCGGAGAAACTCGAATCTCTTGAGATTGGATACGTG TCATCAGTTATGGTAACTGAACTGCTCTGCTCAAATGTGGCATCTCAAGCACCAAACACTGTCCAGCTATCTATTCTCCCCAATATTCAGAAGCTCAACC TTTCAGTGGACTACATTACCGACACCATGGTTGGAACAATATCAAGAGGTATTAACGATCTCGGGTTGTTATTTATGGCTGACAATTGTGCTAGTATGGA AAGTATATGCCTTGGTGGATTTTGTCGAGTCACGGATACAGGGTTCAAGACTATCTTACACTCATGCTCTAGACTATGCAAGCTCAAGGTTTGTCATGGC ACACACTTGACCGATCTTGTGTTCCATGATATCTCAGCAACGGCCTTATCTTTAACTCACGTCAGCTTAAGATGGTGTTACCTCTTAACGAACCACGCAA TAGCGAATCTGGTTTCCAACTCGCAGCTGAGAGTCCTTGACTTGCGAGAATGCAAGAGCCTTGGCGATCAAGCCCTCAAGGCTATCGGCAAGCTCTCTGT TTTGAAGATCTTGAAGTTGGACAGCTCGGATGTAACCGATTCGGGATTGTCTTTCCTCAGACCAAAAGTCATGCAATCTCTGATGTCACTATCTGTAAGA GGCTGCAAGAGACTTACCGATAGATGCATCTCGGCTCTATTCGAAGGCACTTCGAACCTGGAGTTGCAGGAGCTAGATCTTTCGAACATCCCCAACCTGA CAGACGAGGGAATCCTCTCACTAGCCAGAAGTCGAGTTCCGGTCTCAGAACTACGTCTCCGACAATGCCCACTCATCAGCGACACATCGGTCATGGCGTT GGCTTCGATGCAGGTGCATGAAGACCAGCGGCACGGTAACTGCCTTAGGTTGTTGGATCTATACAACTGTGGTGGCATTACTCAGCTCTCGTTCAGGGAG TATGAATCGAGACATCGTGGATGCTTTAGCAAGGAAACGACAGGGAACCGAAGGTTCCTCCACGTTGCGCTCCACGGCGAGGAGATAGGGCCGGAGCAGT GGGACAACATCGACGGGTTTTACATGCACGAGTACGATGACATGGACGAACTGGAGGAGTGGCTTCTTGGAGGCGGCGAGTTTGACGATATTGACATGGT TGATGCTGACAACGCAGCAGAGCTGCTGGCTTAG
AA sequence Show only first row Show all	>Lus10023988 pacid=23160810 polypeptide=Lus10023988 locus=Lus10023988.g ID=Lus10023988.BGIv1.0 annot-version=v1.0 MASTGEGGGANEAEGERLDQMPAALLCTIMSNLDVGSICSIASTCRAFRASASHLFGFIPNFHLLEIALSIDLLSPLLPPNPYLRSLKLDCERLDDAAIS FVAQPSLQELCVHNCTDFSGKLLSEIGGKCPDLRCLYLGSVAEKRGRAIHISDLEELLSGCRQLEALVLMFDVSLFLRNNFTRVWALASEKLESLEIGYV SSVMVTELLCSNVASQAPNTVQLSILPNIQKLNLSVDYITDTMVGTISRGINDLGLLFMADNCASMESICLGGFCRVTDTGFKTILHSCSRLCKLKVCHG THLTDLVFHDISATALSLTHVSLRWCYLLTNHAIANLVSNSQLRVLDLRECKSLGDQALKAIGKLSVLKILKLDSSDVTDSGLSFLRPKVMQSLMSLSVR GCKRLTDRCISALFEGTSNLELQELDLSNIPNLTDEGILSLARSRVPVSELRLRQCPLISDTSVMALASMQVHEDQRHGNCLRLLDLYNCGGITQLSFRE YESRHRGCFSKETTGNRRFLHVALHGEEIGPEQWDNIDGFYMHEYDDMDELEEWLLGGGEFDDIDMVDADNAAELLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	0	1
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	1.0	0.9544
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	1.4	0.9198
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	2.0	0.8851
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	3.7	0.8622
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	4.0	0.8584
AT2G02148			unknown protein		Lus10035090 [exp]	4.5	0.8435
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	4.6	0.8881
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10014352 [exp]	6.0	0.8369
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	9.0	0.8491
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030635 [exp]	10.4	0.8630

Compare expression of checked genes

Lus10023988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.