Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 763 / 0 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 736 / 0 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 672 / 0 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 283 / 1e-89 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 270 / 1e-84 Protein kinase superfamily protein (.1) AT1G62400 256 / 2e-80 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G01850 231 / 1e-70 Protein kinase superfamily protein (.1) AT5G58950 235 / 4e-70 Protein kinase superfamily protein (.1) AT3G63260 223 / 4e-67 ATMRK1 Protein kinase superfamily protein (.1.2) AT1G18160 233 / 2e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025092 [exp] 1108 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10012517 [exp] 931 / 0 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 824 / 0 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10041845 [exp] 718 / 0 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 610 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10005630 [exp] 519 / 2e-180 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 465 / 3e-158 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 463 / 6e-158 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 427 / 6e-146 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139400 [exp] 890 / 0 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 868 / 0 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 730 / 0 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 729 / 0 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 710 / 0 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 671 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 655 / 0 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 640 / 0 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 478 / 1e-163 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 478 / 1e-163 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10023989 pacid=23160714 polypeptide=Lus10023989 locus=Lus10023989.g ID=Lus10023989.BGIv1.0 annot-version=v1.0 ATGGTGGAGATGATGATTACGACGGTAACGACAGAGGAGGATAAAAGAAGCGATAGCTGCGGGAGCCTAGCAGTGCGCGAAGAGAGGTCTTCGTTGCCGC AGGGGAGGCAGCTTAGGCAGAAGGTGGAGGTTTACAATGAGGTTCTCCGTCGGCTCAAGGAATCGGACAATGAAGAGGCCGATCGTGCCGGCTTCGACGA TGAGCTGTGGTCTCACTTCAGTCGCCTTCCTGTTCGATATGCATTGGATGTGAATGTGGAAAGAGCTGAGGATGTTCTGATGCACAAAAGGCTACTGCAT TTGGCTCACGATCCGGCTAATCAGCCGGTGATTGAAGTCCGGCTTGTACAGGTTCCTCCTAGTTCTGATGGAAAGTGGGCTGAGTCTAATTTTCCAGACT CTCCTAGGGAAGAATCTGAACGAAGCAGTCGACTGAGCAAACATCCACCTCCGGCGTTTGGCTCATCTCCTAATCTTGAAGCGCTTGCACTCGAAGAACA TGATTCGGATGATCAGGATGGTGATCATTCTGTACATGCCAATTCAAAATTTTTACGGGCCATGCATGAAATTACTTTTTCAGCGGAAGACAAGCCAAAA CTTCTAAGTCAGCTGACTTCCATGCTGGCGGATGTTGGATTGAACATTCAAGAAGCCCATGCCTTTTCAACAGTTGATCGTTACTCATTGGATGTCTTTG TTGTTGATGGTTGGCCATATGAGGAAACAGAGCAGTTGAGAACTGCTTTGATAAGGGAAGCATCAGAGGTTGAGAGGCAGACTGGGTCAGACCATCACTC ACTACCTTTTACAAAGAAGCGTGAGCCAATTCGAATCAAACATGATCCTGATTCTGTGACAATACCTAATGACGGGACTGATGTCTGGGAAATTGATCTT AAACGGCTAAAGTTCAACAGCATGGTGGCATCTGGATCATATGGGGATCTGTACAAAGGTACTTACTGTAGCCAGGAAGTTGCCATCAAAGTACTGAAGT CTGAACGAGTAAATACAGATATGCAGAAAGAGTTTGCTCAGGAAGTGTTCATAATGAGGAAAGTTCGGCATAAGAATGTTGTACAGTTCATAGGTGCATG TACAAAACCTCCAAGTTTGTGTATAGTAACAGAGTTCATGTCCGGTGGAAGTTTGTATGACTACCTGCATAAACACAAGGGAGTCTTCAAGCTTCCTTCC TTACTAAAAGTCACCATAGATGTCTCCAAAGGAATGAACTACCTGCATCAGAATAACATTATTCATAGAGATTTGAAGGCTGCAAATATTCTTATGGATG AAAATGAGGTGGTTAAGGTTGCAGATTTCGGTGTCGCCAGAGTGAAAGCTCAAACTGGAGTGATGACAGCTGAAACTGGGACCTATAGATGGATGGCTCC GGAGGTCATCGAGCACAAGCCATACGACCACAAAGCTGATGTCTTCAGTTTCGGAATTGTATTGTGGGAGCTATTGACCGGAAAGCTTCCGTACGAGTAC TTAACACCGCTTCAGGCAGCAGTTGGCGTGGTCCAGAAGGGATTGCGACCTACAATCCCGAAACACACAAATCCAAAACTGACGGAGCTCCTGGAGAAAT GCTGGCAACAGGATCCATCCTTGAGACCGGACTTCTCCGAAGTTATAGAGATCCTTCAACACACCGCAAAAGAGGTGGGAGACGATCAGGGCAATGGACG GAAAGAGAAGTTGCACGGAGGGTTCCTATCAGTCCTAAGGAGAAGCCATCATCACCATTGA
AA sequence Show only first row Show all	>Lus10023989 pacid=23160714 polypeptide=Lus10023989 locus=Lus10023989.g ID=Lus10023989.BGIv1.0 annot-version=v1.0 MVEMMITTVTTEEDKRSDSCGSLAVREERSSLPQGRQLRQKVEVYNEVLRRLKESDNEEADRAGFDDELWSHFSRLPVRYALDVNVERAEDVLMHKRLLH LAHDPANQPVIEVRLVQVPPSSDGKWAESNFPDSPREESERSSRLSKHPPPAFGSSPNLEALALEEHDSDDQDGDHSVHANSKFLRAMHEITFSAEDKPK LLSQLTSMLADVGLNIQEAHAFSTVDRYSLDVFVVDGWPYEETEQLRTALIREASEVERQTGSDHHSLPFTKKREPIRIKHDPDSVTIPNDGTDVWEIDL KRLKFNSMVASGSYGDLYKGTYCSQEVAIKVLKSERVNTDMQKEFAQEVFIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSLYDYLHKHKGVFKLPS LLKVTIDVSKGMNYLHQNNIIHRDLKAANILMDENEVVKVADFGVARVKAQTGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEY LTPLQAAVGVVQKGLRPTIPKHTNPKLTELLEKCWQQDPSLRPDFSEVIEILQHTAKEVGDDQGNGRKEKLHGGFLSVLRRSHHHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Lus10007261 [exp]	2.8	0.9334
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	3.0	0.9380
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	5.3	0.9374
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	6.3	0.8999
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	7.3	0.9340
AT3G47160			RING/U-box superfamily protein...		Lus10036934 [exp]	7.5	0.9310
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10001239 [exp]	8.5	0.9214
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10009883 [exp]	8.9	0.9144
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	10.5	0.9264
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	11.7	0.8671

Compare expression of checked genes

Lus10023989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.