Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78610 680 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT1G53470 665 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17000 660 / 0 Mechanosensitive ion channel family protein (.1) AT3G14810 647 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17010 474 / 1e-157 Mechanosensitive ion channel family protein (.1) AT5G12080 411 / 4e-134 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 372 / 8e-119 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 48 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025092 [exp] 1185 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10022654 [exp] 919 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10038148 [exp] 735 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 735 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10005556 [exp] 691 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10012515 [exp] 514 / 4e-180 AT1G78610 421 / 1e-141 mechanosensitive channel of small conductance-like 6 (.1) Lus10013692 [exp] 470 / 4e-162 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 486 / 3e-156 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10036587 [exp] 411 / 1e-134 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178900 [exp] 791 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 751 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 735 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 579 / 0 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G222500 [exp] 429 / 3e-140 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 428 / 5e-140 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 414 / 2e-135 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 391 / 1e-126 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10023990 pacid=23160727 polypeptide=Lus10023990 locus=Lus10023990.g ID=Lus10023990.BGIv1.0 annot-version=v1.0 ATGTCAGGGATTATAGCGAAATCGGGGATGATGTATAGGTCAGGAATGATGAGCAAAACTGGAGGAGAAGAAGATGACGACGATGATTTGGAATTGGAGG ATTTACCAGAAGATATCAAGAAGTCGAAACTGAACATATGGACTTTCCTCCAGTGGTTCGTTTTAATTGCGATTATATTCGCGCTTATCTACGGCTTTAT AAACCCTTGGTTGAAGAAGAAGAGGATAGCTCATCTCAAGCTATGGAAATGGGAAGTTCTGCTCCTGGTTCTGATATGTGGGAGGCTTGTTTCGGGTTGG GGAATTCGGATTCTTGTATTCTGTGTTGAAAGGAACTTTCTTTTACGGAAGAGGGTTCTGTATTTTGTATACGGATTGAAGAACGGTGTTCAGAATTGCT TGTGGCTGGGGCTAGTTCTTCTTGCTTGGTTGTTGTTGTTTGACAAGAGAGTTGAACAGGAAGCCAAAGGCAGAGTGAAAGTTCTCAAGTATCTGACAAA GGTGTTGATTTGTTGCTTAGTGGCGAATTTCATATGGCTGCTGAAGACATTGCTGGTGAAAGTTCTTGCTTCTTCGTTCCACGTTAGTACCTACTTTGAC AGGATTCAGGAGGCTCTTTTCAACCAGTATGTGATCGAGACTTTATCGGGCCCTCCGTTGATTGAGCAGTTGAAGACGAGGGATGAGATTGAGAGGACGG CTGCAGAGGTTGCTAAGCTGCAGAATGCAGGGGCTAATGTTCCACCTGATTTGAGAGAGACTGTGTTCTCTTCTGCCGCTGGGAAGGTTATTGGGAGTGG GAAGCTGATTGGGAAGAGTTTCAAAGGGAGGAGTAATTCTTCCACGGTTGAGAAGAAAGGGGTTGGCGGGGATGATTCGAAGAACACGATTACCATTGAT CGCTTGCATCAGCTTAATACCAAGAACGTCTCTGCTTGGAATATGAAGCGGCTGATGAAGATTGTGAGACATGGCTCGCTTTCAACCCTTGATGAACAGA TACTCCATGGTGCTACTAACCATGGGCTAGAAGATGAGTCGAGGAAGATTAGAAGTGAGTACGAGGCTAAAGCTGCCGCGAGGAAGATCTTCTACAATGT GGCTGGTCAGAATTCAAGGTACATTCATCTAGAGGATATAATGAGGTTCATGAGAGAGGAAGAAGCGTTGAAAACTATGAGTTTCTTTGAAGGAGCATCA GAACATTGTCGAGTTAGCAAATCCTCTCTCAAGAATTGGGTGGTAAATGCGTTCAGGGAAAGGAGGGCACTTGCTCTGACGCTGAACGACACAAAGACAG CAGTGAACAAGCTCCATCACATGGTGAACGTAATAGTAGGTGTGATCCTCGTTATACTCTCTTTGCTCCTCCTCGGGATTGCTCCCCGTAGCTTCTTCGT ACTCCTCGGTTCACAGATTGTTGTCGTGTCGTTCATCTTCGGCAACACCTGCAAGACGTTGTTCGAGTCCCTCATTTTCTTGTTCATAGTCCATCCTTAC GATGTTGGCGACCGGTGCGAGATCGATGAAGTTCAGTTGGTGGTGGAGGAAATGAACATATTGACGACGGTGTTCTTGAGGGGAGACAATCAGAAGGTGG TCTACCATAACAACATACTCGCCACCAAGTCCATCGGCAACTTCTACAGGAGTCCAGACATGGGTGACGCCATCGAGTTCCTCATCCATGTCACCACTCC CGCCGACAAGGTTGCCGTCATGAAACAGAAAATCATCAGCTACATCGAGGGGAAGAAGGAGCACTGGTACCCGAGTCCGATGGTGATAATGAAAGACGTG CAAGGTCTGACGGCGATCAGAATGGCAGTATGGTTCAGGCACAGGATGAACCACCAAGACATGGGAGAGAAGTTCTCGAGACGAGCTCTGCTGGTGGAAG AGATCGTCAAGATCTTCAAAGAACTCGATATTCAGTATCGCCTCTACCCCATAGACATCAACATCCGGCAAACCCCTTCTCCGTTGCCACCTTTGCCCTA CTCGGTCAACAATTAA
AA sequence Show only first row Show all	>Lus10023990 pacid=23160727 polypeptide=Lus10023990 locus=Lus10023990.g ID=Lus10023990.BGIv1.0 annot-version=v1.0 MSGIIAKSGMMYRSGMMSKTGGEEDDDDDLELEDLPEDIKKSKLNIWTFLQWFVLIAIIFALIYGFINPWLKKKRIAHLKLWKWEVLLLVLICGRLVSGW GIRILVFCVERNFLLRKRVLYFVYGLKNGVQNCLWLGLVLLAWLLLFDKRVEQEAKGRVKVLKYLTKVLICCLVANFIWLLKTLLVKVLASSFHVSTYFD RIQEALFNQYVIETLSGPPLIEQLKTRDEIERTAAEVAKLQNAGANVPPDLRETVFSSAAGKVIGSGKLIGKSFKGRSNSSTVEKKGVGGDDSKNTITID RLHQLNTKNVSAWNMKRLMKIVRHGSLSTLDEQILHGATNHGLEDESRKIRSEYEAKAAARKIFYNVAGQNSRYIHLEDIMRFMREEEALKTMSFFEGAS EHCRVSKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHHMVNVIVGVILVILSLLLLGIAPRSFFVLLGSQIVVVSFIFGNTCKTLFESLIFLFIVHPY DVGDRCEIDEVQLVVEEMNILTTVFLRGDNQKVVYHNNILATKSIGNFYRSPDMGDAIEFLIHVTTPADKVAVMKQKIISYIEGKKEHWYPSPMVIMKDV QGLTAIRMAVWFRHRMNHQDMGEKFSRRALLVEEIVKIFKELDIQYRLYPIDINIRQTPSPLPPLPYSVNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10023990 [exp]	0	1
AT1G21150			Mitochondrial transcription te...		Lus10016552 [exp]	2.0	0.6535
AT1G80780			Polynucleotidyl transferase, r...		Lus10032797 [exp]	6.7	0.6090
AT1G58060			RNA helicase family protein (....		Lus10012694 [exp]	10.0	0.5884
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	11.6	0.6588
AT2G15220			Plant basic secretory protein ...		Lus10001609 [exp]	20.7	0.5799
					Lus10040421 [exp]	23.4	0.6175
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	30.6	0.5853
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	31.9	0.6117
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025506 [exp]	32.6	0.6038
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	37.8	0.5987

Compare expression of checked genes

Lus10023990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.