Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18310 471 / 8e-146 unknown protein AT2G17033 290 / 9e-86 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT2G32630 60 / 1e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53170 58 / 5e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 55 / 6e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G17140 54 / 7e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28460 53 / 2e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28370 53 / 2e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G61520 53 / 2e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 49 / 3e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025089 [exp] 1540 / 0 AT3G18310 516 / 1e-169 unknown protein Lus10025090 [exp] 439 / 9e-141 AT2G17033 415 / 4e-143 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10042016 [exp] 64 / 1e-09 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018019 [exp] 63 / 2e-09 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039056 [exp] 56 / 3e-07 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 54 / 8e-07 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 53 / 3e-06 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012268 [exp] 51 / 7e-06 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10016009 [exp] 51 / 1e-05 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041300 [exp] 729 / 0 AT3G18310 593 / 0.0 unknown protein Potri.009G139300 [exp] 322 / 3e-97 AT2G17033 475 / 7e-165 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.009G058300 [exp] 55 / 3e-07 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G008900 [exp] 55 / 5e-07 AT2G32630 612 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G250200 [exp] 53 / 2e-06 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G217600 [exp] 53 / 3e-06 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G090400 [exp] 52 / 3e-06 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 52 / 6e-06 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.009G105600 [exp] 51 / 7e-06 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G123600 [exp] 50 / 1e-05 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10023992 pacid=23160833 polypeptide=Lus10023992 locus=Lus10023992.g ID=Lus10023992.BGIv1.0 annot-version=v1.0 ATGAACTCATCGGAGGAGTGGAAATCTTTCTTCCCAGTCGGCGGCGTCTTCGGAGCGCCTCTACTCCTCTCAAGTCCTGACATTCTTGGTCCTCTCTGTT TCAACCCAAACCCCAATTCCTTAACTTGCCTCTTCGATTCACCTAGCGATCTTTCCCCTCCAATTCTCAACCCTCCTTCACAGCTCTCCATCTCCCGCTT CCTCCAAACTCACGATTCCTACATTCCTCTCTCTGCCATCTCCGACATATCCTTCAAATACTCCGGCTGCGACGAACAAGACTCTGCTTCCTTCTGGCTC TCCAGCAATCGGATTCAGCTCCTTCATGCTCGAAACTCTGTTTTTGTCTTCTTCCCCACCGGCTCCAATTTCGACCAGATAGGCTTCTTAGTGCTGGACG GCGGCGGGTTGAAAGCTGTGGGCAGTTCTGTAGGCGGGGTTTTCACTGCCAATAAGTGTCTGAATCAGCGGGTTAGAGGGATTTTGGTGAATCCAGCTTC GGATTCCAACTGGCTTACAGGTGAATCTTCTTCTGATGACGATGATGCTATTATAGGACATTTATTGGCTTACAGTATGTACACTGTACATTGGTTTTGC GTTATAAATGATGGAGGTACTAGTGAAAAGAAAAAGAAGCCTTCTTTAGTGTGTATGGGCAGCAGAAGTTTCAAGAGCTCTGCCGTCGTGACTGCTTGTT GGAGTCCGCATTTACTCGAAGAGTGCATTGTTCTGTTGGAGGATGGCTCTTTGTTTCTGTTTGATTTGGATTCATCGTCGCCCTCGTATAGTTCGAGCTT GAGTTTTGGAGGGACGCGGCTGAAAGTGTCGTGGGATGATGAATCGAAGAAGAGTTTTAAATGGTTGGGATGTGAGTTCAGTTGGCATCCTAGAACACTG ATCGTTGCACGCTCTGATGCTGCTTTCTTGGTTGATTGGCGGTTTGACGATCATAAGGCCACTTGTTTAGCAAAGTTCGATATGTTCGGTCCATATGGGA GGACACGATTCCAAGCTTTCTCCAAGGCAGTTTCCAGTAATTTCCACTTCATATTGGTATCTAGTAGCTCGTTAGTTCTTTGTGATGTTCGAAGACCTCT ATCTCCGTTGTTGATATGGACACACGGTCTTGACAGGCCGTGCTATGTAGATACCTTTAGGCTGTCCGACTTGAGGTCGAATTTGAAAGACGACGATACA CACCAGTGGGCGAATAAATCGGGGTTCGCCATTGTACTGGGATCGTTCTTGAATTCTGAGTTCAGCATCTTTTGTTATGGACCGCCCTTGCCTGCTCCGT ACAAGTCGGTTGGTTCGAAAATTTCTCAGCTTTCCAAGCCGATGTATGCTTGGGGGCTCCCTTCGAATCTTAACCTGCAGAATGCTGATTGTGTTTGCGG TAGCTGTCTTGTGAGAGAAGAGTTTGCGAAAGATACTCTTCCTGAATGGCTTGACTGGAATCAGAAGAGAGATTTAGTTCTTGGCTTTGGCATTTTGAGT GGAGATATGTATGGCTCTTTGACTGGGGAATTCGGTGGATTCGGTCTTATTAGGTTGATGTCTTCCGGGAAGCTCGAGTTACAGCAGTACTCTGCTTCTT GGGATTTGTCTAGAACGTTGGAAAATCATACTGATCATCCATTGTTGAGTGGTGGGAATAATTTGTATACTGCTCTGGAGGATGAGAAGTATAAATTCCC CAGAAAGTTTAAATATTTGGACTTGGATTATCTCTCTGCATACTTGAATGGTGATCTTTCCAGGATCTTGGATTTAAAGTTACGAAACTCCTGCAAGAGT CCTATGGAAGAGAAAAATTCTTTTGGCTTGGACATGCATGAAGCATTGTGCGAGAAGTTGAAGAGCAGCGGGCTGAATCGGTTTCGAGCATCTCCGATTA ACAATCTTGTTCTTAAGGATGTGAACCTGCCAGCGAGCATTCGTGATATTGCCTCGAGGAAAATATGGGCGGGTTTGCCGATGGAACTTCTACAGCTGGC ATTCTCTAGCTACTCTGAACTCCTTGAAGTGCAGTTAGACCAGAAGGAAATAGCATTGGAATTTTCAGCCGTCCCCGATCTTCCCCAGTTGCCACCGTTC CCCTTGAGGATGCCTTCCCATCGTAGCAATAAATGGTCGAATTCGGTGCAGCGCAGTGGCGATACTCTCGTGGGTCCGGTTCTTCCTCTACCGGTCTTGA TTACACTTCATGAGCTCCAAAATGGATCCCAAAATCCCGAGGAGGAAGCTACAGAGTTCTCTGCAGAGGGGGAAATTGATATGCAATGCAATGAAGTGAT GGAGATGGCGAAGGAAGTGGCGTTTGGAGGAGATTCGATGATGGCTAAGTTTGGTGATGACGAAACAGCAGTGTCCCTTGCCAGCGAGAAGGATGCTATC TTGGTGGCCGCTGAACAGCCGAAATCTTTCTTGATGTATCGTCCAGCAGCATTACAGGGACGTGGAGGAAATGGCAACAGCAGTTACTCGAGGGATGAGA GCTCTAGTACCTTCATTACAAGACTAGAAAGCAAAGAAGCCAGTAATAATGACAAGCAGGAACACCCTACCAGGAAAATCTTCAAAGGTTTATGTCCAAT CGACTTGAAATTCCCTGATGATCTTGAGGATTTCCACTCCAAGGAACATTTAGCATACAAAATGTTGAAAAGAGGTGTGGATAACAATTGGTCCTCGCCG CAAAATACCAGCTTAGCAGCGAAGGGAAACTCTCCAAGGTGTACGAACATTTCTGTAAAGCAGCACCCACCTTTCGAATCCTTGGAAGCTTTCATTATGT CAACGCACGTGTGGAGTCCTCCATTATCGGCGGCCTTACACGTGGCGTCAAACCACCATCGCCGGAGTGTCTACGACCACGGCAACCGTCGATTAACTAT TACAGCTCTGAGCAAGCAAGGAGAGCGATTCTTCTCTTCTCTCACAGCTACAGACGCCGTTGGAGAAGGAGACGATTCGACTGCAAACCGTCTGATAAAG AAATTCGTCGCAGCTTCACCGAAGTCCATTGCCTTGGAAGCACTTTCATCTCTGCTTTCTCCGGACTCTTCCCACGTCCGCATTTCCCGTCTTGCTCTCC CTCTTTACTTGAAGATCACTGAAGCTTCATGGTTTGAATGGAACCCAAAGCTGGCGGCAAATCTGGCTGCATTTCTTGACAAACGAAGACAATGCAACGA ATCAGAAGCTCTGATTTCCGAAACAGTCTCCAAATTACAGAGCCGAGAAAGGGAGATTGCTCTGTTTTACTGCGAGTTAGTTGGTTGCCATTCGAAGCAC GATTCAGTTCGAGGATTTGACTGCTCTTTAGCTCGATTGAGAGAGCTCGTTGACAGCTCGAGCTCTGTTTATGTGAAGAAGCAGGGCTACAAGGCAATGG TGAGCGGGTTAGCTGAAAGAGGCAGAATGAAAGAAGCAGAGGATATGGTTGCTGAGATGACAGGCAAAGGAATCAAACAATCACAGTTCGAACTCAGGTG CCTTCTTTACGGATACGGAAGATCCGGACTGTTTGCAGATATGCAGAGGATCGTTGGGAAGATGGAGAAGCAAGGATTTGAAATCGACACAGTTGCTTCG AACATGATTGTTTCGTCTTACGGAGCTCACAATGCACTTCCCGAGATTGTCACCTGGCTGAGGAAAATGAAAGCTTCGCGAATTCCTTATTCGATCAGGA CTTGGAATTCGGCATTGAACTCGTGTCCCACGCTCATGTTAATGCTGCAGAACTCTTCTGGCGGCTGCCCTGTTTCTATCGCGGGGGTGGGGGAGAATGT GACTGAAACAGAGGGCAAGGCGGGTCAGGAGCTGGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCTGAATTGGCTTTTG TCTTTGCAGTGCACCCAAGTAGCAACTCGATGGCAAACACAGACCAAGATCCTAACCCAAGAAGAGTCCCAAACTTCTATTGCTTCTATCCAACCAAGTA GCCCAGAAAATTCCCGATGCGAAAAGGAAACTGGAAAACTTGAAGCCTTTTACTAA
AA sequence Show only first row Show all	>Lus10023992 pacid=23160833 polypeptide=Lus10023992 locus=Lus10023992.g ID=Lus10023992.BGIv1.0 annot-version=v1.0 MNSSEEWKSFFPVGGVFGAPLLLSSPDILGPLCFNPNPNSLTCLFDSPSDLSPPILNPPSQLSISRFLQTHDSYIPLSAISDISFKYSGCDEQDSASFWL SSNRIQLLHARNSVFVFFPTGSNFDQIGFLVLDGGGLKAVGSSVGGVFTANKCLNQRVRGILVNPASDSNWLTGESSSDDDDAIIGHLLAYSMYTVHWFC VINDGGTSEKKKKPSLVCMGSRSFKSSAVVTACWSPHLLEECIVLLEDGSLFLFDLDSSSPSYSSSLSFGGTRLKVSWDDESKKSFKWLGCEFSWHPRTL IVARSDAAFLVDWRFDDHKATCLAKFDMFGPYGRTRFQAFSKAVSSNFHFILVSSSSLVLCDVRRPLSPLLIWTHGLDRPCYVDTFRLSDLRSNLKDDDT HQWANKSGFAIVLGSFLNSEFSIFCYGPPLPAPYKSVGSKISQLSKPMYAWGLPSNLNLQNADCVCGSCLVREEFAKDTLPEWLDWNQKRDLVLGFGILS GDMYGSLTGEFGGFGLIRLMSSGKLELQQYSASWDLSRTLENHTDHPLLSGGNNLYTALEDEKYKFPRKFKYLDLDYLSAYLNGDLSRILDLKLRNSCKS PMEEKNSFGLDMHEALCEKLKSSGLNRFRASPINNLVLKDVNLPASIRDIASRKIWAGLPMELLQLAFSSYSELLEVQLDQKEIALEFSAVPDLPQLPPF PLRMPSHRSNKWSNSVQRSGDTLVGPVLPLPVLITLHELQNGSQNPEEEATEFSAEGEIDMQCNEVMEMAKEVAFGGDSMMAKFGDDETAVSLASEKDAI LVAAEQPKSFLMYRPAALQGRGGNGNSSYSRDESSSTFITRLESKEASNNDKQEHPTRKIFKGLCPIDLKFPDDLEDFHSKEHLAYKMLKRGVDNNWSSP QNTSLAAKGNSPRCTNISVKQHPPFESLEAFIMSTHVWSPPLSAALHVASNHHRRSVYDHGNRRLTITALSKQGERFFSSLTATDAVGEGDDSTANRLIK KFVAASPKSIALEALSSLLSPDSSHVRISRLALPLYLKITEASWFEWNPKLAANLAAFLDKRRQCNESEALISETVSKLQSREREIALFYCELVGCHSKH DSVRGFDCSLARLRELVDSSSSVYVKKQGYKAMVSGLAERGRMKEAEDMVAEMTGKGIKQSQFELRCLLYGYGRSGLFADMQRIVGKMEKQGFEIDTVAS NMIVSSYGAHNALPEIVTWLRKMKASRIPYSIRTWNSALNSCPTLMLMLQNSSGGCPVSIAGVGENVTETEGKAGQELVXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLNWLL SLQCTQVATRWQTQTKILTQEESQTSIASIQPSSPENSRCEKETGKLEAFY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18310			unknown protein		Lus10023992 [exp]	0	1
AT4G02720			unknown protein		Lus10022052 [exp]	1.4	0.9070
AT4G02720			unknown protein		Lus10042601 [exp]	2.0	0.8906
AT5G13970			unknown protein		Lus10035116 [exp]	2.4	0.8621
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	3.9	0.8586
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	4.9	0.8553
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	5.3	0.8590
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	5.9	0.8467
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	8.0	0.8456
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	10.4	0.8450
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	13.0	0.8304

Compare expression of checked genes

Lus10023992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.