Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35140 554 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G38480 520 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G45620 408 / 4e-139 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G10940 141 / 5e-36 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 60 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 52 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 52 / 6e-07 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G15900 49 / 7e-06 PRL1 pleiotropic regulatory locus 1 (.1) AT2G47410 49 / 8e-06 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT5G49430 49 / 1e-05 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025088 [exp] 930 / 0 AT4G35140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034751 [exp] 441 / 3e-150 AT3G45620 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10033290 [exp] 433 / 6e-149 AT3G45620 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10040538 [exp] 87 / 1e-19 AT5G10940 291 / 7e-95 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10040537 [exp] 60 / 1e-10 AT5G10940 219 / 3e-68 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 63 / 2e-10 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 61 / 8e-10 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022847 [exp] 54 / 3e-07 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10037748 [exp] 53 / 5e-07 AT5G49430 1224 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139000 [exp] 623 / 0 AT4G35140 602 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G178700 [exp] 574 / 0 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G158300 [exp] 132 / 9e-33 AT5G10940 1080 / 0.0 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103132 [exp] 104 / 3e-25 AT5G10940 390 / 2e-132 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103066 [exp] 71 / 4e-14 AT5G10940 209 / 4e-64 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 56 / 2e-08 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G019601 [exp] 52 / 7e-07 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019833 [exp] 51 / 9e-07 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002700 [exp] 50 / 3e-06 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 50 / 3e-06 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023993 pacid=23160767 polypeptide=Lus10023993 locus=Lus10023993.g ID=Lus10023993.BGIv1.0 annot-version=v1.0 ATGGGGAAGAGAAACAGAAGCCACGCGAGCCTCGACGCTGCGGTGGTCGATGTTTGCCAGAGAGAGGTCGGCCAGCTGTCCGGCCGCCGCTTCTCTCACC GTCTTGCTGGCTCCAAGGATCTTGTACTGCGACTCGAGCTCTGCAGGAAACTAGAGAAGCATCTTGGTTGTGTTAATACTGTGAGCTTCAATGCTTGTGG TGACATTCTGGTGTCAGGTTCGGACGACAGACAGGTGGTTCTATGGAACTGGGAAAATGGAAGTGTCAAGCTTGCTTTCCATTCAGGTCACCAGGGTAAT GTCTTTCAAGCAAAGATCATGCCTTACTCCGGTGATCATAGCATTGTTACTTGTGCTGCCGATGGTCAGGTTCGACATGCTCAAATTCACGAGCATGGGG AAGTGGAAACCGAAATGCTTGCAAAACATCAAGGCCGAGCTCATAAGCTGGCCGTTGAGCCTGGAAGCCCTCATATATTTTACACTTGTGGCGAGGATGG ATTAGTTCAGCATTTCGATCTACGGACGAGGACTGCTACAGAACTCTTTAACTGTCCACCTCTTGAGGAGAGGGCAGCTTATATGCCGGTGGTTCATCTA AATGCTATTGCAATTGATCCGAGGAACCCTAATCTCTTTGCAGTTGCAGGGTCTGACGAATATCCCCGACTCTATGATATCCGCAGGTATAAGTGGGATG CATCAACTGATTTTAGTGACCCTGCAGACTACTTCTGCCCTTCTCATCTGATTGGTAATGACCAAGTTGGGATAACAGGTCTAGCTTTCTCTGACCAGAG TGAGCTACTTGTCACATACAATGATGAATTCATCTATCTTTTTAACCGGGACATGGGATTGGGACCCAATATCGAGAAGTCTTCTGAGGATTGCTATGAG AAACTTAATCCTCAGGTTTATAAAGGACACCGTAACTGCGAGACTGTGAAAGGTGTCAACTTCTTTGGGCCGAGATGTGAGTATGTTGTGAGTGGGTCTG ACTGTGGTCGGATTTTCATTTGGAAAAAGGAAGGTGGAGATTTGATACATGTCTTGGAAGCTGATAAGCATGTCGTGAACTGTATTGAACCTCATCCTCA TAGTACCGTACTAGCCAGCTGTGGAATCGAGCGCGACATAAAGATATTCACTCCAAAGGCCATCGAAAAAGCTACACTGCCTTCAAACATTGGACAGCTG ATACCAGGCGCTAGAGCTTCATTTCAAGAGGTGCTGTTGGAGCTGTTTACGCTACGAGGGCTCCGGGGACGGCGAGCTAATTTGGCGAACATCAGTGAAG AGAGGTCAGCTCCTGCTAGTGAACTTATGGATCTTATAATGGCATTCAACACCAACGGCAATCCTTCTTCTTCAGATGATGGAGAGAACTCCACTAGTCA GGAAGACTTGTTTGCTTAA
AA sequence Show only first row Show all	>Lus10023993 pacid=23160767 polypeptide=Lus10023993 locus=Lus10023993.g ID=Lus10023993.BGIv1.0 annot-version=v1.0 MGKRNRSHASLDAAVVDVCQREVGQLSGRRFSHRLAGSKDLVLRLELCRKLEKHLGCVNTVSFNACGDILVSGSDDRQVVLWNWENGSVKLAFHSGHQGN VFQAKIMPYSGDHSIVTCAADGQVRHAQIHEHGEVETEMLAKHQGRAHKLAVEPGSPHIFYTCGEDGLVQHFDLRTRTATELFNCPPLEERAAYMPVVHL NAIAIDPRNPNLFAVAGSDEYPRLYDIRRYKWDASTDFSDPADYFCPSHLIGNDQVGITGLAFSDQSELLVTYNDEFIYLFNRDMGLGPNIEKSSEDCYE KLNPQVYKGHRNCETVKGVNFFGPRCEYVVSGSDCGRIFIWKKEGGDLIHVLEADKHVVNCIEPHPHSTVLASCGIERDIKIFTPKAIEKATLPSNIGQL IPGARASFQEVLLELFTLRGLRGRRANLANISEERSAPASELMDLIMAFNTNGNPSSSDDGENSTSQEDLFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	0	1
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	1.0	0.8860
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	1.4	0.8196
AT1G05430			unknown protein		Lus10006108 [exp]	8.1	0.7755
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	10.0	0.7677
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	10.2	0.7759
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	12.4	0.7682
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	13.7	0.7385
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	13.7	0.7882
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10000565 [exp]	14.4	0.7622
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10023414 [exp]	15.2	0.7161

Compare expression of checked genes

Lus10023993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.