Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20330 458 / 1e-163 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 427 / 2e-151 SMT3 sterol methyltransferase 3 (.1) AT5G13710 213 / 2e-67 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G64970 78 / 2e-16 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G73600 59 / 2e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 58 / 2e-09 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 58 / 2e-09 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G78140 49 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69523 48 / 4e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G41040 45 / 4e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005625 [exp] 408 / 1e-143 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10029498 [exp] 122 / 4e-33 AT5G13710 380 / 2e-133 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10004158 [exp] 108 / 9e-30 AT1G20330 142 / 9e-43 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10009537 [exp] 77 / 1e-15 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 73 / 2e-14 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10039600 [exp] 64 / 2e-12 AT5G13710 174 / 2e-54 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10031348 [exp] 64 / 2e-11 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 62 / 1e-10 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042006 [exp] 56 / 1e-08 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245800 [exp] 453 / 2e-161 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 452 / 2e-161 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.001G263700 [exp] 223 / 4e-71 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 218 / 3e-69 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 177 / 1e-53 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 72 / 3e-14 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.012G047400 [exp] 58 / 3e-09 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 58 / 3e-09 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.018G120000 [exp] 49 / 1e-06 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G095100 [exp] 47 / 8e-06 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10023995 pacid=23160779 polypeptide=Lus10023995 locus=Lus10023995.g ID=Lus10023995.BGIv1.0 annot-version=v1.0 ATGGATTCAACCACAATCCTCTTCACACTATTCATCCCTGTCCTCTTCGCCGTCCTCTACTGGTTCGTCTGCCTCCTGGGATCGGCCGAGGTCAAGGGCA AGCACGCCTCCCAGCTCACCGGCGGCTCAATCTCCGGCGAGAAAATCCAGGACAAGTACAACCAGTACTGGTCCTTCTTCCGATCCCCTTCCCAAATCGA GACCGCCGACAAAGTCCCCGCCTTTGTCGACACTTTCTACAACCTCGTCACCGACATCTACGAGTGGGGGTGGGGCCAGTCTTTCCACTTCTCCCCTTCA TTGCCGGGGAAATCTCACCGTGACGCCACGCGCCTCCACGAGGAATTCGCCGTCGATCAGCTCAATGTCAAGCCGGGGGACAAAATCCTCGACGCCGGAT GCGGAGTCGGTGGGCCCATGAGGGCGATTGCGGCCCACTCCGGTGCGAATGTCGTCGGGATCACAATCAACGAGTATCAGGTAAATAGGGCACGGATGCA TAACAAGAAGGCCGGATTGGACGGCCTTTGCGAGGTTGTTAAGGGTAATTTCTTGTCCATGCCGTTTGAGGATGAGAGCTTCGACGGAGCTTATTCAATT GAAGCGACCTGCCATGCTCCCAAACTTGAAGAGGTTTACGCTGAGATTTTTAGGGTTTTGAAGCCTGGAGCTGTTTATGTTTCCTACGAGTGGGTCACCA CTGATTTGTTCAAAGCTGAGGATCCAGTTCACGTCGAGATAATCGAAGGGATTGAGAGAGGGGATGCTTTGCCAGGGCTGAGGAGGTACAACGACATTGC TGAAACCGCCATGAAAGATGGGTTTGAAGTGTTAGGTGATGATGGATGA
AA sequence Show only first row Show all	>Lus10023995 pacid=23160779 polypeptide=Lus10023995 locus=Lus10023995.g ID=Lus10023995.BGIv1.0 annot-version=v1.0 MDSTTILFTLFIPVLFAVLYWFVCLLGSAEVKGKHASQLTGGSISGEKIQDKYNQYWSFFRSPSQIETADKVPAFVDTFYNLVTDIYEWGWGQSFHFSPS LPGKSHRDATRLHEEFAVDQLNVKPGDKILDAGCGVGGPMRAIAAHSGANVVGITINEYQVNRARMHNKKAGLDGLCEVVKGNFLSMPFEDESFDGAYSI EATCHAPKLEEVYAEIFRVLKPGAVYVSYEWVTTDLFKAEDPVHVEIIEGIERGDALPGLRRYNDIAETAMKDGFEVLGDDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	0	1
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	1.0	0.9298
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	5.3	0.8983
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	5.8	0.9019
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	5.9	0.8907
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	6.0	0.8959
					Lus10019304 [exp]	6.2	0.8995
AT5G36230			ARM repeat superfamily protein...		Lus10029666 [exp]	6.4	0.8411
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	6.7	0.8959
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	6.9	0.8587
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	10.0	0.8844

Compare expression of checked genes

Lus10023995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.