Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025086 [exp] 241 / 3e-83 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138700 [exp] 83 / 5e-21 ND / Potri.004G178500 [exp] 81 / 3e-20 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023996 pacid=23160790 polypeptide=Lus10023996 locus=Lus10023996.g ID=Lus10023996.BGIv1.0 annot-version=v1.0 ATGGACCTGAGACTCAACCATCTTGCAGCAGGCGAAAGGAAGGTTTCGTCCCCGAAACGAGAGAGGTCGATGAAAGGCAGAAGGCTGACGAGGAGTAACC AGTTACAGCACCACCAGCAGCTGCTCGAATCGATTGCGAGAGCAAACGGTGGAGAAGGCGTTGTTAGTCATGAAGGAGGAGGAGTTGTGAGGATGAAGGT GCTGGTGAAGAAGCAAGATTTGAAGCAGATGCTGGAGCTATTGGGAGATGGCAAGTTGCAGACCAGTAGCTTCAGGCCTACTGGAGCTGAAACCGAATTG TCTTCATCGTCGTTCTGTAATGTGGAACAAAGATTGAATCTTTTGAGGAGGAAGCATGTGTCGAGAGGAAATGGTGGAAAGGGTTGCCGGGATTCGTCGC CGCGGTCGTGGATTCCGGCGCTTCAAAGCATTCCGGAGTAG
AA sequence Show only first row Show all	>Lus10023996 pacid=23160790 polypeptide=Lus10023996 locus=Lus10023996.g ID=Lus10023996.BGIv1.0 annot-version=v1.0 MDLRLNHLAAGERKVSSPKRERSMKGRRLTRSNQLQHHQQLLESIARANGGEGVVSHEGGGVVRMKVLVKKQDLKQMLELLGDGKLQTSSFRPTGAETEL SSSSFCNVEQRLNLLRRKHVSRGNGGKGCRDSSPRSWIPALQSIPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023996 [exp]	0	1
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	8.1	0.9287
					Lus10025086 [exp]	9.5	0.8670
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10011318 [exp]	11.4	0.9282
AT1G06930			unknown protein		Lus10024185 [exp]	18.4	0.9226
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	19.1	0.9237
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	24.0	0.9166
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	26.2	0.9161
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	26.4	0.9179
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Lus10032261 [exp]	31.1	0.9085
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10010001 [exp]	31.7	0.9148

Compare expression of checked genes

Lus10023996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.