Plant FIBer expression Database

Lus10023997 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016973
[exp]
54 / 4e-09 AT5G06280 68 / 7e-15 unknown protein
Lus10004216
[exp]
44 / 6e-06 AT3G52520 71 / 3e-16 unknown protein
Lus10029420
[exp]
40 / 0.0001 AT3G52520 64 / 1e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G178101
[exp]
57 / 1e-10 ND /
Potri.016G072500
[exp]
39 / 0.0004 AT5G06280 61 / 4e-12 unknown protein
Potri.006G205200
[exp]
38 / 0.001 AT5G06280 52 / 5e-09 unknown protein
PFAM info
Representative CDS sequence
>Lus10023997 pacid=23160836 polypeptide=Lus10023997 locus=Lus10023997.g ID=Lus10023997.BGIv1.0 annot-version=v1.0
ATGGACGCCGACTCTGAATTGCCGCCGACGATGGTGAGCCGCAAGTCAGCTGCTACCTTCTCTGTCTTTACGAGCTTGACGATAGAGATGGTGGAGATAG
ACCAGTCGACCAAGGAGTACACCAGCCTGGAAAAACTGCTCCGGACGATGTCTCCGTCGTCGTCCATCTTGTCGCCGACGGCAGGAAATCCCGGCTTTCA
CGACATCCCACTTAAGGATCCGATCGTGAGGCAGGCCGCCTGGGCCTACCTGCAGCCGATGGGAGCGGCATCCGAGACTTGCGACGTCGGCGGGGGGATG
AAGGAGGTTTTCCGGCAGGTTAAGGATAGGTTCGTTGCTGGGGCGGAGAAGTGCGGCTGCTTAGAGTGGATCCACGACGTTGTTTTTGAAGGGGTTTTGG
GATTGTTGTTCCCGAAGAAGAGGAGAATTGGTTGCTGTACAGAGGAGGGTGAGGAGGAGCAAGAGGGAGAGAACGACGGCGACGGCGTCTCTGTCTGCTC
CGGCAAGAAGGTTAATTGA
AA sequence
>Lus10023997 pacid=23160836 polypeptide=Lus10023997 locus=Lus10023997.g ID=Lus10023997.BGIv1.0 annot-version=v1.0
MDADSELPPTMVSRKSAATFSVFTSLTIEMVEIDQSTKEYTSLEKLLRTMSPSSSILSPTAGNPGFHDIPLKDPIVRQAAWAYLQPMGAASETCDVGGGM
KEVFRQVKDRFVAGAEKCGCLEWIHDVVFEGVLGLLFPKKRRIGCCTEEGEEEQEGENDGDGVSVCSGKKVN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10023997
[exp]
0 1
AT1G69670 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B... Lus10009610
[exp]
6.6 0.9252
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10027585
[exp]
14.3 0.9092
AT2G47485 unknown protein Lus10009156
[exp]
23.5 0.9230
AT1G03940 HXXXD-type acyl-transferase fa... Lus10039745
[exp]
35.3 0.9025
AT3G44190 FAD/NAD(P)-binding oxidoreduct... Lus10001856
[exp]
35.4 0.8836
AT5G64250 Aldolase-type TIM barrel famil... Lus10003271
[exp]
37.4 0.9058
AT4G01870 tolB protein-related (.1) Lus10038052
[exp]
41.2 0.8988
AT3G50910 unknown protein Lus10028325
[exp]
42.2 0.9055
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10004704
[exp]
44.7 0.8893
AT4G11600 LSC803, PHGPX, ... glutathione peroxidase 6 (.1) Lus10008537
[exp]
48.6 0.8694

Lus10023997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.