Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09880 350 / 8e-114 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 347 / 1e-112 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 345 / 5e-112 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT5G03470 343 / 2e-111 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G21650 345 / 5e-111 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 342 / 2e-110 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G54930 337 / 6e-109 Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 337 / 1e-108 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 322 / 3e-103 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT4G38490 56 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025085 [exp] 887 / 0 AT4G15415 353 / 7e-117 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10032082 [exp] 359 / 4e-117 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10023920 [exp] 347 / 9e-113 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10021511 [exp] 338 / 7e-110 AT3G09880 739 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10022612 [exp] 338 / 3e-109 AT3G09880 770 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10014619 [exp] 332 / 2e-108 AT4G15415 604 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10014417 [exp] 336 / 4e-108 AT5G03470 759 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10035321 [exp] 334 / 2e-107 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10037057 [exp] 336 / 4e-107 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138400 [exp] 597 / 0 AT3G09880 336 / 4e-110 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.004G177900 [exp] 561 / 0 AT3G26020 363 / 3e-121 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 353 / 6e-115 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.010G054300 [exp] 353 / 2e-114 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 350 / 2e-113 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 345 / 2e-111 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.010G054400 [exp] 343 / 4e-111 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.006G122300 [exp] 342 / 9e-111 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.017G070100 [exp] 336 / 5e-108 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.002G226200 [exp] 335 / 2e-107 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10023998 pacid=23160781 polypeptide=Lus10023998 locus=Lus10023998.g ID=Lus10023998.BGIv1.0 annot-version=v1.0 ATGGGTGTTTTCAGGAATAACAGCCAACAGAGGGATTTGGTGGCACCCTTGCCAAAGAAAAGAACATCCACAACACTCCAGCATCTCTTCAACTTGGAAT CCAACAACAAAGAGTGTTGCAGTCCCAAGTTGGGGAAGCAATTATCATTATCATCTTCGGGAGGCCATTCTGAGAATGAAGAGATCATGTCCTTAATATC TCACTGCTCCACGTTCTTCTTCACATTCGTGGACGAATCCGAGTCCTCATCAGACCAGGAACTCAAAAGAGTGAAGCTTCTCCAGCTACTCTCTATCATG AAATCCCTCAAAAAGCAGCTTCCTGATCACGTCATCTCCTCTCTCGTCTCCATGATCGCCGCCAATCTCTTCAGACCACTTTCTCCATCATCAAACAACA ACAACAATGTGATGATTCATTTGGCTCCTACCGAAGAAAGCGAGGATCTTGTTTCGTCACTTTCGCCAGTATGGTCACACCTCCAAGTCATATACGACAT CCTTCTCAGGCTGCTTTTGAACGTAGATGCAAAATCGATTCGCTATTTCGTAAACCAGCAGTTCGTGATCGGACTCCTTGTGCTGTTCCAGTCGGAGGAT CCGAGAGAAAGAGAGAGCGTTAAGAACGTTTACCACAGGATATACTCCAAGTTCACCTTCTACAGAGGGTTCATGAGGAAGTCGATGAACGACGTCCTCC TGCACTATGTTTTCGATGCCGAATTTAAGCACTGTGGGATCGGAGAGCTGCTCGAGATTTGGGGGAGTATTATTAATGGATTCACGGTCCCGCTTAAGGA TGAGCATAAGGTGTTTTTGACGAGAGTGCTGATTCCTTTGCACAAACCAAAAGGGATGGTTGTTTATCATAGGCAGTTGGGCTACTGTATGACTCAATTT GTGCAGAAGGAGCCTATGATGGGTGGGTTGGTTGTTAGGGGGATTTTGAAGTATTGGCCGATCACTAATTGCCATAAGGAAGTTCTGATGATCAGTGAGT TGGAAGAGTTAGTGGAGAATATGGATCCTGATCATTACAGAAGGCTGGCTTTGCCTTTGTGCACCCAAATTACTAGATGCCTCAGCAGCTGGAACTCACA GGTAGCAGAACGAGCTCTATACATATGGAACAACGAGGTGTTTGTAAAGATGGCAACATCAGCAATAGAACAAGTGTTCCCAGTAGTGGTGGAAGGGATG GAGAAGAACTTGAAAGGGCACTGGAGCAGCAGCGTGAAGCAGCTGACGGAGAACGTGAAGAAGATGGTTGAGGAAATGGACCAATCCCTTTACGACAAGT GTCTGCGGGAGATTGGGCACAAGGAATTCGTAGCACGCCAGGAAGATATGAAGAGGAAGGCTAAATGGGAAAGAATTGAACTGCTGGCAGACATGAACGA CCAGCCCCAGAGCCACCACCATCATTATCGTCATCAGTTTGTTCAGCCGCCGCGGCCAGCTGCAGTTGTTGGCTGGTTTGTTCTGAGGTTGAGGGTAAGA TTGACCATATACATTACAGCAACCCAAGCAGGCAGCCAACTTATGAATTGGTCAGCAAAGTGTTTGAAACAAGCTGTTGAGAATGGTTCTGAATTTCTTA TCAATCATCCAGGAAGTAGAATGTGGAAGTCTTCAGTGAGGAATTCTCATGTTTCGTCTGCCGGAAGTGGTGGTTACCAGCTGAACCATGCAGACAATTT GCCTAAGGTGGAACCGCTTTCGATAATCCTTATGAAGAAGTTGAGATCTGTGTTAGTATTTCTGTTAGAGCAACCAAGTCAGCTTAAGCACTTGGAGTGG CCGGGCTTCCAGAGCACGCTGACGACTGCTACGCTGACCCTCGTTCTCGTTGCGCTGCTCATTGTCGCACTCTCATCAGTTGACTCCATCTTATGTTATC TGCTGGCTTTGTTCCTTAGGAGAACTGCATGA
AA sequence Show only first row Show all	>Lus10023998 pacid=23160781 polypeptide=Lus10023998 locus=Lus10023998.g ID=Lus10023998.BGIv1.0 annot-version=v1.0 MGVFRNNSQQRDLVAPLPKKRTSTTLQHLFNLESNNKECCSPKLGKQLSLSSSGGHSENEEIMSLISHCSTFFFTFVDESESSSDQELKRVKLLQLLSIM KSLKKQLPDHVISSLVSMIAANLFRPLSPSSNNNNNVMIHLAPTEESEDLVSSLSPVWSHLQVIYDILLRLLLNVDAKSIRYFVNQQFVIGLLVLFQSED PRERESVKNVYHRIYSKFTFYRGFMRKSMNDVLLHYVFDAEFKHCGIGELLEIWGSIINGFTVPLKDEHKVFLTRVLIPLHKPKGMVVYHRQLGYCMTQF VQKEPMMGGLVVRGILKYWPITNCHKEVLMISELEELVENMDPDHYRRLALPLCTQITRCLSSWNSQVAERALYIWNNEVFVKMATSAIEQVFPVVVEGM EKNLKGHWSSSVKQLTENVKKMVEEMDQSLYDKCLREIGHKEFVARQEDMKRKAKWERIELLADMNDQPQSHHHHYRHQFVQPPRPAAVVGWFVLRLRVR LTIYITATQAGSQLMNWSAKCLKQAVENGSEFLINHPGSRMWKSSVRNSHVSSAGSGGYQLNHADNLPKVEPLSIILMKKLRSVLVFLLEQPSQLKHLEW PGFQSTLTTATLTLVLVALLIVALSSVDSILCYLLALFLRRTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10023998 [exp]	0	1
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10008623 [exp]	24.7	0.7483
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	26.3	0.7253
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10028222 [exp]	35.7	0.6845
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	41.6	0.7133
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	48.7	0.7040
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	51.7	0.7064
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	53.2	0.7062
AT5G66580			unknown protein		Lus10019659 [exp]	54.2	0.6757
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	57.5	0.6806
AT1G28100			unknown protein		Lus10001800 [exp]	60.5	0.6661

Compare expression of checked genes

Lus10023998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.