Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16950 1274 / 0 ATTRN1 transportin 1 (.1.2) AT2G16960 446 / 2e-146 ARM repeat superfamily protein (.1.2) AT5G53480 89 / 1e-17 ARM repeat superfamily protein (.1) AT3G08943 85 / 1e-16 ARM repeat superfamily protein (.1) AT3G08947 82 / 9e-16 ARM repeat superfamily protein (.1) AT4G27640 50 / 1e-05 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025083 [exp] 1657 / 0 AT2G16950 1392 / 0.0 transportin 1 (.1.2) Lus10008864 [exp] 80 / 6e-15 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 79 / 2e-14 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 78 / 2e-14 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 78 / 3e-14 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 77 / 7e-14 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10029067 [exp] 44 / 0.0006 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10034202 [exp] 44 / 0.0008 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138200 [exp] 1427 / 0 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.004G177700 [exp] 1427 / 0 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.015G010400 [exp] 92 / 9e-19 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 88 / 2e-17 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 85 / 2e-16 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 75 / 2e-13 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 56 / 2e-07 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 46 / 0.0002 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10023999 pacid=23160806 polypeptide=Lus10023999 locus=Lus10023999.g ID=Lus10023999.BGIv1.0 annot-version=v1.0 ATGGCGGCGACGGCGACTGTTGCTTCATCGTGGCAGCCGCAGGAAGGAGGGGTGAAGGAGATCTGCGGCTTATTGGAGCTCCAGATTTCGCCGTCTTCCA CTGCTGATAAGTCCCAGATTTGGCAGCAGCTGGAGCTCTACTCTCAGCACGCTGATTTCAACAACTACCTCGCGTTCATCCTCGCTCGTGCCGAGGGTAC ATCAGTAGAAATTCGACAAGCTGCTGGTCTTCTACTAAAGAACAACCTTGGGAAGGCATATAAGTCCATGGCTCCTGAAAATCAACAGTATGTTAGGTCA GCAATTCTTCCGTGCTTAGCAGCACCTGATAAGCATATAAGATCAACTGGTGGGACCATCATCACAGTCATAGTGCAGCTTGGGGGAGTTGTGGGATGGC CCGAGCTACTACAAGCTCTTGTTACTTGCATGGAGAGTAATGACTTCAATCACATGGAAGGTGCGATGGATGCCCTGTCTAAGATTTGTGAAGATGCCCC TCAGCTATTGGATTCTGATGTTCCTGGTTTACCTGATCGTCCCATCCAGATTTTCCTTCCTCGATTATACCAGTTTTTTCAGTCACCACATACCTCTTTG AGAAGGATGGCCCTGGGTTCTGTAAATCAATACATTATGTTGATGCCAGCTGCTCTATATGCATCCATGAACCAGTATCTCCAGGGATTGTTTGTTCTTG CTAATGATCCTGCTCCAGAAGTTAGAAAATTGGTTTGTGCAGCTTTTGTTCAGCTGATTGAAGTTCGTCCCTCATTTCTAGAGCCACATTTAAGACAAGT CATGGAGTACATATTGCAAGTCAACAAGGATAGTGATGAAGAAGTGGCCCTTGAAGCTTGTGAATTTTGGTCTGCATATTGTGATACTCAGTTGCCGCCT GAGAACTTGAGAGAATTCTTGCCACGTTTGATTCCGGTTTTATTATCAAACATGGTTTATGCTGATGATGATGAGTCCCTTGCTGAAGCCGAGGAGGAGG ACTCACTTCCAGACAGGGATCAGGATCTGAAACCTCGTTTTCATGCATCCAAATTTCATGGATCAGAAGATGGGGAAGATGATGATGATGACATAGTTAA TGTCTGGAATTTAAGAAAATGCAGTGCCGCTGCTCTTGACGTTCTGTCAAATGTGTTTGGTGATGAGATTCTCCCATCATTTATGCCGGTTGTTCAGAGT AAGCTGGCTGCTACTGGTGACGAGTCGTGGAAGGAGAGGGAAGCAGCTGTCTTGGCTATTGGTGCTGTCGCTGAGGGTTGTATCACGGGTCTTTATCCAC ATCTACCTCAGATGGTTGAATTTCTGATCCCTCTTTTGGATGATAATTTCCCCCTCATACGGAGTATATCTTGCTGGACGCTCTCTCGATTCAGCAAATT CATTGTTCAGGAAAATGGCCATGAGAAAGGTTATGAGCATTTTGACAAGGTCCTTATGGGTATTCTCCGGAGAATATTGGACAATAACAAGCGGGTCCAA GAGGCTGCTTGTTCAGCGTTTGCAACATTTGAAGAGGAGGCTGCTGAGGAGTTGGTTCCACGTTTGGAAGTCATTCTGCAGCACCTCATGTGCGCTTTTG GGAAGTATCAGAGAAGAAATCTCAGGATTGTTTACGATGCCATTGGAACTCTGGCAGATGCTGTTGGTACAGACCTTAATCAGCCCACATATCTTCAAAT TTTGATGCCACCATTGATTGCAAAATGGCAACAACTCTCAAATACAGACAAGGATCTATTTCCACTATTAGAGTGCTTTACATCCATAGCACAGGCACTG GGTACTGGATTCTCTCAGTTTGCTCAGCCTGTGTTCCAAAGGTGCATAGAGATCATTCACACACAACAGCTGGCAAAGGTTGATCAAGCTTCTGGTGGAG CTCTTTACGATAAAGAGTTCATTGTTTGCTCTTTGGATCTTCTTTCTGGGCTTTCTGAGGGTCTTGGTAGTGGAATTGAGAGTTTGGTATCGCAAAGTAG TTTGAGAGACCTGCTTCTGCAGTGCTGCATGGATGATGCTTATGATGTTCGGCAGAGCGCCTTTGCTCTTCTTGGGGATCTTGCAAGAGTATGTGCTGTT CATTTGAATCCTCGTTTACCAGAATTTCTGGATGTTGCAGCGAAGCAGTTGAACGCTCCAAACCTAAAGGAAACTCTTTCAGTGGCGAATAATGCCTGCT GGGCTATCGGAGAGTTAGCCGTTAAGATCCAAAAAGAGATCGCCCCTATTGTTGTCAATGTCATCTCTTACTTGGTGCCAATTCTACAACACTCCGAGGT ATTGTCTATTTTACTGGAAATGTTTGAAACTGTGCTGGATTCGAAATTCTCATTCCCGAATTGCTACAATGACCACAATCAGGAGTTGAACAAGTCGCTT GTAGAAAATACTTCCATCACTCTAGGAAGACTGGCATGGGTTTGTCCTGAGCTAGTGTCCCCCCACATGGAGCATTTTATGCAACCTTGGTGCATTGCTT TGTCTATGATACGTGATGATGTTGAGAAGGAAGATGCATTCCGAGGTTTATGTGCAATGGTTAGAGCAAATCCATCAGGCGGTCTAAGTTCCCTTGTTTT CATGTGCAAAGCTATCGCTAGTTGGCATGAAATAAGGAGTGAAGACCTGCACAATGAAGTTTGCCAAGTGTTGCATGGTTATAAACAGCTACTGAGGGAT GGGGCATGGGATCAATACATGTCTGCTTTGGAGCCCCCAGTAAAGGAGAAGCTATCCAAATACCAACGTCATTGCCATCGTGCTGTGTCCGTTGGGTCCA CTGCCGACAGTCAGATTTTAGTGTTGTCCAATACGATTGGAAGTCATGAGGTATTATTGGAGCATGGACCTCGTCTTGGCCATAAAGATTCTTTCCAGGG CAAAGAGTCACCAGTCGCCATGATATTACTTGAAGCTTGA
AA sequence Show only first row Show all	>Lus10023999 pacid=23160806 polypeptide=Lus10023999 locus=Lus10023999.g ID=Lus10023999.BGIv1.0 annot-version=v1.0 MAATATVASSWQPQEGGVKEICGLLELQISPSSTADKSQIWQQLELYSQHADFNNYLAFILARAEGTSVEIRQAAGLLLKNNLGKAYKSMAPENQQYVRS AILPCLAAPDKHIRSTGGTIITVIVQLGGVVGWPELLQALVTCMESNDFNHMEGAMDALSKICEDAPQLLDSDVPGLPDRPIQIFLPRLYQFFQSPHTSL RRMALGSVNQYIMLMPAALYASMNQYLQGLFVLANDPAPEVRKLVCAAFVQLIEVRPSFLEPHLRQVMEYILQVNKDSDEEVALEACEFWSAYCDTQLPP ENLREFLPRLIPVLLSNMVYADDDESLAEAEEEDSLPDRDQDLKPRFHASKFHGSEDGEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPSFMPVVQS KLAATGDESWKEREAAVLAIGAVAEGCITGLYPHLPQMVEFLIPLLDDNFPLIRSISCWTLSRFSKFIVQENGHEKGYEHFDKVLMGILRRILDNNKRVQ EAACSAFATFEEEAAEELVPRLEVILQHLMCAFGKYQRRNLRIVYDAIGTLADAVGTDLNQPTYLQILMPPLIAKWQQLSNTDKDLFPLLECFTSIAQAL GTGFSQFAQPVFQRCIEIIHTQQLAKVDQASGGALYDKEFIVCSLDLLSGLSEGLGSGIESLVSQSSLRDLLLQCCMDDAYDVRQSAFALLGDLARVCAV HLNPRLPEFLDVAAKQLNAPNLKETLSVANNACWAIGELAVKIQKEIAPIVVNVISYLVPILQHSEVLSILLEMFETVLDSKFSFPNCYNDHNQELNKSL VENTSITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDVEKEDAFRGLCAMVRANPSGGLSSLVFMCKAIASWHEIRSEDLHNEVCQVLHGYKQLLRD GAWDQYMSALEPPVKEKLSKYQRHCHRAVSVGSTADSQILVLSNTIGSHEVLLEHGPRLGHKDSFQGKESPVAMILLEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	0	1
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	2.0	0.9128
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	2.8	0.9019
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	5.3	0.9066
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	5.5	0.8918
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	6.7	0.8606
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	6.7	0.9023
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	7.6	0.8437
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	9.2	0.8812
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	10.4	0.8735
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	11.0	0.8428

Compare expression of checked genes

Lus10023999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.