Plant FIBer expression Database

Lus10024000 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G57540 60 / 9e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035345
[exp]
73 / 1e-16 AT1G57540 166 / 6e-55 unknown protein
Lus10029982
[exp]
73 / 1e-16 AT1G57540 164 / 2e-54 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G002900
[exp]
59 / 2e-11 AT1G57540 162 / 1e-53 unknown protein
Potri.013G002301
[exp]
38 / 0.0003 AT1G57540 63 / 3e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10024000 pacid=23160791 polypeptide=Lus10024000 locus=Lus10024000.g ID=Lus10024000.BGIv1.0 annot-version=v1.0
ATGGTTTCTGATCTTGAAGCGAGAGAACGGGCAGCTGCAAATGCTCGAGAAGACCCTCAAGACGAGGAGCAGAGAATTGCTAAAGAGCTTGAGGTGGAAG
TTGAGAGGGTGCGTCGTGCTATGCGCCCAAGTAAAGCAGCACCAACAACAACTACCTCGAAGAAGAACGAGAGAGAAGGATTATCACAACCGAGCAGGAC
TTATAAGGACAAGGCAGAGTTTCACCCAAGCTCCCAGGAGTCTACGGAATTTGATCCATTTCAAACTTTGTATTCGAGAAGCTTTTTCAAAAGGCTAGCT
AGCAGGGGAATAATGTCGTTAAGACAATACTTGGGGTACTCGGAGGGAGAGCTGATGAGGCATACAGCTGGCATCTTCACCGTCAGTCGGGCTTTCGGGT
TCTGGATTCTCTGCAGGCTTCATTACGGACTAAAGGAGTCCTGCTTCGATAACCTTTATGCCACCTGCCTTAGACCCTGGCTACTGCAGGTTCATGGAGG
GATTGATGTGCTTGGCTTCATGGTTGTGTCCACTTGCTACAGTTATTCTGTTTGTTGTAAGAATGTTTCTTCCGGACCTCAAGCTCTACCCTTCATGTAC
GCAGGTCAAGAATTCGCGGGCTTCCGAGCTAGTTTTCGATTGCGATTCTTCCCGTGA
AA sequence
>Lus10024000 pacid=23160791 polypeptide=Lus10024000 locus=Lus10024000.g ID=Lus10024000.BGIv1.0 annot-version=v1.0
MVSDLEARERAAANAREDPQDEEQRIAKELEVEVERVRRAMRPSKAAPTTTTSKKNEREGLSQPSRTYKDKAEFHPSSQESTEFDPFQTLYSRSFFKRLA
SRGIMSLRQYLGYSEGELMRHTAGIFTVSRAFGFWILCRLHYGLKESCFDNLYATCLRPWLLQVHGGIDVLGFMVVSTCYSYSVCCKNVSSGPQALPFMY
AGQEFAGFRASFRLRFFP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G57540 unknown protein Lus10024000
[exp]
0 1
AT3G43590 zinc knuckle (CCHC-type) famil... Lus10016232
[exp]
5.7 0.7672
AT3G52120 SWAP (Suppressor-of-White-APri... Lus10037485
[exp]
5.9 0.8397
AT3G56320 PAP/OAS1 substrate-binding dom... Lus10034219
[exp]
6.0 0.8242
AT5G47650 ATNUDX2, ATNUDT... ARABIDOPSIS THALIANA NUDIX HYD... Lus10012319
[exp]
9.2 0.8293
AT2G32760 unknown protein Lus10037826
[exp]
10.8 0.8319
AT4G00290 Mechanosensitive ion channel p... Lus10005121
[exp]
11.3 0.8034
Lus10021867
[exp]
15.0 0.7261
AT5G57580 Calmodulin-binding protein (.1... Lus10018437
[exp]
17.7 0.7977
AT5G23210 SCPL34 serine carboxypeptidase-like 3... Lus10017392
[exp]
22.6 0.7504
AT4G11070 WRKY ATWRKY41, WRKY4... WRKY family transcription fact... Lus10003894
[exp]
24.4 0.7696

Lus10024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.