Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38500 702 / 0 Protein of unknown function (DUF616) (.1) AT1G28240 270 / 7e-84 Protein of unknown function (DUF616) (.1) AT1G53040 251 / 6e-77 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT2G02910 242 / 2e-74 Protein of unknown function (DUF616) (.1) AT4G09630 245 / 4e-73 Protein of unknown function (DUF616) (.1) AT1G34550 233 / 2e-68 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT5G42660 213 / 4e-63 Protein of unknown function (DUF616) (.1) AT5G46220 184 / 2e-52 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025082 [exp] 924 / 0 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 272 / 2e-84 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 268 / 7e-83 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 252 / 4e-78 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 251 / 9e-77 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 249 / 2e-75 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 239 / 5e-71 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 235 / 9e-70 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 212 / 7e-63 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138000 [exp] 774 / 0 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 762 / 0 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 277 / 3e-86 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 270 / 2e-84 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G119300 [exp] 269 / 6e-84 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.004G044100 [exp] 268 / 1e-82 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 242 / 4e-72 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 236 / 5e-72 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 241 / 1e-71 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 215 / 9e-64 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10024001 pacid=23160808 polypeptide=Lus10024001 locus=Lus10024001.g ID=Lus10024001.BGIv1.0 annot-version=v1.0 ATGGAGAGCGACGTTCCACGGTCTGTTTCTTCCCGCGTGACCAGGAGAGGAGAAAGGAGCAATCAAATCCCTCTCTCAAAAGGTGAGCAAGACGGGTTCT TTTCATCCGGGAAACTTCCCAGTGATTACCCGATGAAAATGCTGTGGAAGCGAGGGTTTATTCGACTGGTGTTCGTAGCTGGGATCGTTTGGATGCTGCT CATTCTTTTTGTGCTGCTGCTCCACGTCTGGTCTTGCCAATCTTCCTATGTATTCTTTTCAGCTATTTGTAACAAAGAAAGCAAGGTATACAACCTTCTA AACACGTGGGGTTTTGTACAGCAACAACACCGTTGTCCAATACCTGTTGCTAATGATCCTGACAAGATAGTTATCCCCGAGGGGAAGACTTCGGACAGTA TCATCAATAATCTTTCTTACATTGTGGATGATGATCCTGTCAATAATGGATCATCCCCGTTATTTGGAGGACATATAAGTTGGTCACAACGAGAAGAGAG TTTCAATTTAAAACCCTCCATGAAGGTTCATTGTGGCTTTATACGCGATGGTGGTTCGGAAATGGATCCCAGTGACATCGAATATGTCAAGAAGTGTAGG TTCGTTGTCGCTTCCGGGATTTTCGACGGATATGACGTGCCTCACCAGCCTATTAATATAAGCCCGCGTTCCAAGAAGCTCTTCTGTTTTCTTATGGTGG TGGACGAGGTATCTCTTGAGTTCATCAACGAAAATACCACCATTAGCAAGGACAGTAAAGGTGGTCAGTGGGTTGGCATCTGGCGTCTCATCCCATTGAA GAACCCACCTTATGATGAACCCAGACGGAACGGCAAAGTTCCGAAAATCTTGACACACAGATTGTTCCCTCAAGCTCGCTACAGCATTTGGATCGATGGT AAAATGGAGCTGATAGTTGATCCCCTGCTATTACTTGAAAGATACTTATGGCGGGATAAGAACACGTTTGCTATTGCTCAGCATAAGCATCATCGTAGCA TATACGAAGAAGCTGATGCGAACAAACGGAGGAAAAGATATGCTCGACCTCTCATTGATCTGCATATGAAGATCTACAGATATGAAGGGGTAGAACCCTG GAGTCCCAAGTCAGGCACAATCAGCGATGTGCCAGAGGGAGCAGTGATCATCAGGGAGCACACAGAACTGAGCAATCTGTTTAGCTGCTTGTGGTTCAAC GAAGTCCATCTGTTCACTCCAAGGGACCAGCTGAGTTTCGGGTACGTAGTGCACAGGCTAGGGAGTTCGTTCAAGTTCTTCATGTTCCCCAATTGTGAGT ACTACTCGTTATTCGTGCTGCATCCACACACGAGGGAACATTCGTCGAAGGTGGAGTGGGTGAAGAGTTTGAGTGAGTTTAAGGGGGAAGGCAGCAGCAT GAGAGAGAGTAGAGGTGGGTTAGGTCTGTGGACTCCTTACCCTGGAGATCTTACATCTGTAGTTTTGCCAAAAGTTGTACGAACATCGAAAGCAGGTTAG
AA sequence Show only first row Show all	>Lus10024001 pacid=23160808 polypeptide=Lus10024001 locus=Lus10024001.g ID=Lus10024001.BGIv1.0 annot-version=v1.0 MESDVPRSVSSRVTRRGERSNQIPLSKGEQDGFFSSGKLPSDYPMKMLWKRGFIRLVFVAGIVWMLLILFVLLLHVWSCQSSYVFFSAICNKESKVYNLL NTWGFVQQQHRCPIPVANDPDKIVIPEGKTSDSIINNLSYIVDDDPVNNGSSPLFGGHISWSQREESFNLKPSMKVHCGFIRDGGSEMDPSDIEYVKKCR FVVASGIFDGYDVPHQPINISPRSKKLFCFLMVVDEVSLEFINENTTISKDSKGGQWVGIWRLIPLKNPPYDEPRRNGKVPKILTHRLFPQARYSIWIDG KMELIVDPLLLLERYLWRDKNTFAIAQHKHHRSIYEEADANKRRKRYARPLIDLHMKIYRYEGVEPWSPKSGTISDVPEGAVIIREHTELSNLFSCLWFN EVHLFTPRDQLSFGYVVHRLGSSFKFFMFPNCEYYSLFVLHPHTREHSSKVEWVKSLSEFKGEGSSMRESRGGLGLWTPYPGDLTSVVLPKVVRTSKAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38500			Protein of unknown function (D...		Lus10024001 [exp]	0	1
AT4G01400			unknown protein		Lus10002677 [exp]	3.7	0.8970
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	5.3	0.8798
AT3G19870			unknown protein		Lus10030556 [exp]	9.4	0.8749
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	9.5	0.8774
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10040431 [exp]	9.5	0.8688
AT3G12110		ACT11	actin-11 (.1)		Lus10004169 [exp]	10.0	0.8512
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031155 [exp]	17.5	0.8594
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10005057 [exp]	18.3	0.8484
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	18.5	0.8609
AT5G52180			unknown protein		Lus10031574 [exp]	19.4	0.8493

Compare expression of checked genes

Lus10024001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.