Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38510 955 / 0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G20260 951 / 0 ATPase, V1 complex, subunit B protein (.1) AT1G76030 947 / 0 ATPase, V1 complex, subunit B protein (.1) ATCG00120 117 / 2e-28 ATCG00120.1, ATPA ATP synthase subunit alpha (.1) ATMG01190 117 / 4e-28 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1) AT2G07698 117 / 1e-27 ATPase, F1 complex, alpha subunit protein (.1) AT5G08690 116 / 1e-27 ATP synthase alpha/beta family protein (.1) AT5G08670 115 / 2e-27 ATP synthase alpha/beta family protein (.1) AT5G08680 115 / 2e-27 ATP synthase alpha/beta family protein (.1) ATCG00480 107 / 6e-25 ATCG00480.1, ATPB ATP synthase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027827 [exp] 997 / 0 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10005057 [exp] 997 / 0 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10025081 [exp] 884 / 0 AT4G38510 842 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10035264 [exp] 116 / 1e-27 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035263 [exp] 116 / 1e-27 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034631 [exp] 115 / 2e-27 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 102 / 5e-23 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10034836 [exp] 100 / 2e-22 AT1G78900 1210 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10033382 [exp] 100 / 3e-22 AT1G78900 1199 / 0.0 vacuolar ATP synthase subunit A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137800 [exp] 965 / 0 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.004G177500 [exp] 959 / 0 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.013G138000 [exp] 116 / 7e-28 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1) Potri.008G126600 [exp] 114 / 6e-27 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.010G116600 [exp] 112 / 2e-26 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.007G062242 [exp] 112 / 2e-26 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1) Potri.013G162800 [exp] 104 / 6e-24 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.010G253500 [exp] 103 / 2e-23 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.008G005000 [exp] 102 / 4e-23 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00006 [flax] [poplar] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain CL0275 [flax] [poplar] PF00306 [flax] [poplar] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024002 pacid=23160700 polypeptide=Lus10024002 locus=Lus10024002.g ID=Lus10024002.BGIv1.0 annot-version=v1.0 ATGGGGGTTGCTCAAAACGGTCACGACATGGAGGAGGGAACTCTGGAGATCGGAATGGAATACAGGACTGTTTCTGGAGTTGCTGGACCTCTTGTTATTC TTGACAAAGTGAAGGGACCAAAATATCAGGAGATTGTCAATATCAGACTAGCTGATGGAACAACCAGGCGTGGTGAAGTCTTGGAGGTCGATGGAGAGAA AGCTGTTGTCCAGGTGTTTGAAGGAACGTCTGGGATCGATAATAAATTCACCACTGTGCAATTCACTGGGGAGGTTCTGAAAACTCCCGTCTCATTGGAT ATGCTTGGTAGAATATTTAACGGTTCTGGAAAGCCCATTGACAATGGCCCTCCTATCTTGCCCGAGGCCTATCTTGATATTTCTGGAAGTTCTATTAATC CCAGTGAAAGAACTTATCCGGAAGAGATGATACAGACTGGTATTTCTACCATTGATGTCATGAATTCCATAGCTAGAGGACAAAAGATTCCTTTGTTCTC TGCTGCTGGTCTGCCTCATAATGAAATTGCTGCTCAGATTTGTCGTCAAGCTGGTTTGGTTAAGCGGTTAGAGAAGTTAGAAAACCTTCTTGAGGGTAGC GGAGAAGACGACAATTTTGCTATTGTATTTGCAGCCATGGGTGTTAACATGGAAACTGCACAGTTCTTCAAACGTGATTTTGAGGAGAATGGGTCCATGG AAAGGGTTACACTTTTCCTGAACTTGGCAAATGACCCCACAATTGAGCGTATTATCACACCGCGAATTGCTCTTACTACTGCAGAGTATTTGGCCTATGA ATGTGGAAAGCACGTCCTTGTCATTCTTACAGATATGAGTTCTTATGCTGATGCCCTTCGCGAGGTTTCAGCTGCTCGAGAAGAAGTACCCGGACGACGT GGATATCCTGGGTATATGTACACCGATTTGGCTACAATCTATGAGCGGGCCGGCCGTATCGAAGGACGCACTGGGTCCATTACCCAGATTCCAATTTTAA CTATGCCTAATGATGATATCACACATCCAATTCCTGATCTTACTGGCTATATCACTGAAGGGCAAATATACATTGATAGGCAACTCCACAACAGACAGAT CTTCCCTCCAATCAATGTTCTTCCGTCCCTATCTCGTCTGATGAAGAGTGCCATTGGTGAGGGGATGACTCGTCGAGACCATTCTGACGTGTCCAACCAG CTATATGCAAACTATGCTATTGGAAAGGATGTTCAGGCAATGAAAGCCGTGGTGGGAGAAGAAGCTCTTTCTTCAGAAGATCTGCTATACTTGGAGTTCT TGGACAAATTCGAGAGGAAGTTCGTCGCTCAAGGAGCCTACGACACCCGCAACATCTTCCAATCGCTAGACTTGGCGTGGTCACTGCTTCGCATCTTCCC TCGCGAGCTGCTCCACCGTATACCAGCAAAGACCTTGGATTTATTCTACAGCCGAGATTCGACCAATTGA
AA sequence Show only first row Show all	>Lus10024002 pacid=23160700 polypeptide=Lus10024002 locus=Lus10024002.g ID=Lus10024002.BGIv1.0 annot-version=v1.0 MGVAQNGHDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLADGTTRRGEVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD MLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKLENLLEGS GEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRR GYPGYMYTDLATIYERAGRIEGRTGSITQIPILTMPNDDITHPIPDLTGYITEGQIYIDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ LYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWSLLRIFPRELLHRIPAKTLDLFYSRDSTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10024002 [exp]	0	1
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10017329 [exp]	2.0	0.9193
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	2.0	0.9114
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10028796 [exp]	2.8	0.8982
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	3.5	0.9022
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10015440 [exp]	3.9	0.8965
AT3G12110		ACT11	actin-11 (.1)		Lus10004169 [exp]	4.2	0.8850
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10005057 [exp]	4.6	0.8860
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	6.5	0.8946
AT4G23460			Adaptin family protein (.1)		Lus10032286 [exp]	7.1	0.8830
AT2G15240			UNC-50 family protein (.1)		Lus10027865 [exp]	8.7	0.8606

Compare expression of checked genes

Lus10024002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.