Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025080 [exp] 974 / 0 AT4G14210 67 / 1e-11 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177400 [exp] 622 / 0 AT4G14210 79 / 2e-15 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.014G148700 [exp] 50 / 3e-06 AT4G14210 940 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10024003 pacid=23160780 polypeptide=Lus10024003 locus=Lus10024003.g ID=Lus10024003.BGIv1.0 annot-version=v1.0 ATGGAGTTGGGCTGCAGGTTGAGGTTCACGACGATTCCTTGCAGCTGCTTAATCAATCCATCGTCATCATCAACTTCAATGCATAGGATTGTAAGTTACG GCAGTAATGGTTTTGGTTGTGGGTTAAAAGCTAACTCAGTAGCTGTTCAACGGAGAATCTATGCCGTTGCTAGTTTAGCAGAGCCTCACAGCCAGGAAGA AAAAGAGGAAGAGAAGGGCAAGAGAAAGAAAGTGGTTGTTATTGGCTCTGGCTGGGCTGGTCTTGGTGCTGCTCATCACCTCTGCAACCAGGCAAAACCC CACTCTCACTTTCATGGGAATGGGTTTGGGAGCCCTGATGATGCTGGTATCATCCAAGGCTTTTGGTATCCTTACAAGAACATATTCAGTCTGGTTGATG AGCTCGGGATCAAACCCTTCACCAACTGGATGAAGTCTGCGGTCTATTCTAGTGAAGGCTTGGAGGCTGAGTTTCCTGTGTTCCAAGATCTTCAACAGCT TCCAGCTCCACTGGGAACCTTGTTCTACACTCAATTCAATCGGCTCCCATGGGTGGATAGATTAACTTCCCTTCCCCTCATGGCTACAGTTGTTGACTTT GATAATACTGACACGGCTTGGAGGAAGTATGACTCAATCACTGCAAGGGAGCTTTTCAAGCGATTCGGCTGTTCAGAGAAGCTTTTTTGCCAAGTCGTTG ATCCATTGATCCATGCTGGCCTGTTTGCTCCACCAGAGCAATGTAGTGCAGCTGCTACACTTGGAATCCTATACTACACTTCCATTGCTCATCAGAAAGA TTTTGATGTGCTATGGTGTCGAGGAGCAGTTAAACAAACAGTCTTCAATCCATGGAAGGATTCGTTGAAGTCTAGAGGCTGTCGATTCATCAAAGGAACA AAAGTGAAGGATTTGGTAGTCAATGAAGGAACAGGTTCTATTTCTGCAGTTGCTTGCACTGATAATGATGATGTTGATGCTGATGCTGTTATTCTGGCTG TTGGGGTCTCAACGGTTCAGGAACTTGTCAAGAATAGTGCAGCGTTATGTTCGAGGGACGAGTTTCTGAAGGTTCTGAACTTGGCTTCTATTGATGTGAT CACTGCTAAGCTTTGGCTTGATAAGAAGGTCAACGTTCCGAATCCGAGCAATGCATGTGCTGCAACAGATGAATCCTTCGGATGGACATTCTTTCACTTG AATGCACTCCATGATGAGCATAAGGACAGTCCACAAACAGTCCTTCAAGCCGATTTCGTAATCTCTCTTCCTTCTTCTAATCTCGGCACGCCAACGAGTG AATTGCAGACTTTACTGATACTATTCTGGTGTCACGAAATTTTGCAGTTCAATGCTAATGAGTTCTTACCATTAAGCGACAAGGAAATTGCGAGAAGGGT ACTCTTCAACCTCTCCAATTGTGTTAAGGATATTGAGAATGCCAACTTGGTTGATATGGACATCTCCACATCCCCAAAGTCCTTAACTCATTTCTTTCCA GGTTCTTACAAGCACATGATGAGAGGCTCCACATCCTTCCCGAACCTGTTCATGGCCGGAGACTGGATTGTAAACCGCCATGGATCCTGGTCGCAGGAGA AAGCATATGTGACGGGGCTAGAAGCAGCCAACAGGGTAGTTGATTTGCTAGAAGAAGGAAGCTTTGCCAAGATCATCCCAGTCGAGGAAGACGAGGCTCA TGTTCAAGCTCTTCGCGGCATCAATAGGCAGTTGAATGATCTCAGAGCTCAGCTTCCATTCTCTGATTACTTCCTCCAATGA
AA sequence Show only first row Show all	>Lus10024003 pacid=23160780 polypeptide=Lus10024003 locus=Lus10024003.g ID=Lus10024003.BGIv1.0 annot-version=v1.0 MELGCRLRFTTIPCSCLINPSSSSTSMHRIVSYGSNGFGCGLKANSVAVQRRIYAVASLAEPHSQEEKEEEKGKRKKVVVIGSGWAGLGAAHHLCNQAKP HSHFHGNGFGSPDDAGIIQGFWYPYKNIFSLVDELGIKPFTNWMKSAVYSSEGLEAEFPVFQDLQQLPAPLGTLFYTQFNRLPWVDRLTSLPLMATVVDF DNTDTAWRKYDSITARELFKRFGCSEKLFCQVVDPLIHAGLFAPPEQCSAAATLGILYYTSIAHQKDFDVLWCRGAVKQTVFNPWKDSLKSRGCRFIKGT KVKDLVVNEGTGSISAVACTDNDDVDADAVILAVGVSTVQELVKNSAALCSRDEFLKVLNLASIDVITAKLWLDKKVNVPNPSNACAATDESFGWTFFHL NALHDEHKDSPQTVLQADFVISLPSSNLGTPTSELQTLLILFWCHEILQFNANEFLPLSDKEIARRVLFNLSNCVKDIENANLVDMDISTSPKSLTHFFP GSYKHMMRGSTSFPNLFMAGDWIVNRHGSWSQEKAYVTGLEAANRVVDLLEEGSFAKIIPVEEDEAHVQALRGINRQLNDLRAQLPFSDYFLQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	0	1
AT1G10660			unknown protein		Lus10029133 [exp]	2.4	0.9032
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10043453 [exp]	2.4	0.8962
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	2.6	0.9043
AT5G61040			unknown protein		Lus10021155 [exp]	6.0	0.8740
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	6.6	0.8802
AT3G57220			Glycosyl transferase family 4 ...		Lus10016077 [exp]	7.7	0.8636
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	8.9	0.8671
AT1G55535			unknown protein		Lus10021858 [exp]	10.0	0.8439
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	10.6	0.8551
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	13.4	0.8228

Compare expression of checked genes

Lus10024003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.