Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20920 293 / 2e-99 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025079 [exp] 459 / 8e-165 AT2G20920 333 / 5e-115 Protein of unknown function (DUF3353) (.1) Lus10005055 [exp] 322 / 1e-110 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10005056 [exp] 322 / 1e-110 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10027826 [exp] 306 / 1e-104 AT2G20920 309 / 7e-106 Protein of unknown function (DUF3353) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177300 [exp] 327 / 9e-113 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1) Potri.009G137600 [exp] 320 / 5e-110 AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1) Potri.019G018300 [exp] 42 / 0.0002 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1) Potri.013G046200 [exp] 42 / 0.0002 AT1G08640 358 / 5e-125 Chloroplast J-like domain 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10024004 pacid=23160711 polypeptide=Lus10024004 locus=Lus10024004.g ID=Lus10024004.BGIv1.0 annot-version=v1.0 ATGGCTGCCACTCTCTCCCTCCGCCTCAACCACCGCCTCCCTTCCTCCTCCTTCCTCCGGCCGCCTTCAGTGCCCTTGCCGACAGCCCTGACTTTCAATT CTCGCCGGAGCGAGTTCTGGAGGGGATCAATTTCTCCGCCTCAGCACCGCCAGTTGCTCTCCGGTACCAGAGCCAGCTCTAGAGCAGACGATCCTGCGCC GTACCGGATGTCGCTGGAGAACGCGCTCCGGCTCCTCGGCGTCCCCGACGGTGCATCTTTCGACGACGTCCTTCGCGCCAAAAACTCCATCCTCGCCTCT TGCAAAGACGACAAGGAGGCGATTGCACAGGTGGAGGCAGCATACGACATGATACTAATGCAAAGCCTGTCCCAACGACGAGCAGGGAAAGTTGCAAGCA GCGGCATCCGTTACGCTGATGTAAAACCTCTAGGTCCTCCAGGTGGTGGTGGTGGTGGGATGGGATCAATGCCTCAATGGCTGCAGACCACAGTCAAGAA CGCTTCCGTAACAGCAGAGGCGCCGCCCGTCACTAGCGAATTGGGCATACAAGCCGGTGTTTACGGAGCATTGATGGTCCTGACCTACGCGAATGGGGCT GCCACGTCATCTGACCTGCCTTACGCAGGAGCTGACGTGCCAGGCCTGCTCCTCGCCACGAGTTTCGGAGCTTCCTTGTACTTCATGACAAAGAAGAACG TCAAACTAGGCAAGGCGACCGCGGTCACTTTGGGAGGACTTGTGGCCGGTGCGGTGGCTGGTTCGGCCGTTGAGAGCTGGCTACAGGTTGACATTGTGCC GTTTCTAGGCCTTCATTCTCCGGCGGCGGTGGTCAGTGAGTTCATTATGGTCTCTCAGTTCTTGGTCTCGTTGTACTTGAGGTAG
AA sequence Show only first row Show all	>Lus10024004 pacid=23160711 polypeptide=Lus10024004 locus=Lus10024004.g ID=Lus10024004.BGIv1.0 annot-version=v1.0 MAATLSLRLNHRLPSSSFLRPPSVPLPTALTFNSRRSEFWRGSISPPQHRQLLSGTRASSRADDPAPYRMSLENALRLLGVPDGASFDDVLRAKNSILAS CKDDKEAIAQVEAAYDMILMQSLSQRRAGKVASSGIRYADVKPLGPPGGGGGGMGSMPQWLQTTVKNASVTAEAPPVTSELGIQAGVYGALMVLTYANGA ATSSDLPYAGADVPGLLLATSFGASLYFMTKKNVKLGKATAVTLGGLVAGAVAGSAVESWLQVDIVPFLGLHSPAAVVSEFIMVSQFLVSLYLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20920			Protein of unknown function (D...		Lus10024004 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	1.7	0.9025
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	5.5	0.8974
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	9.7	0.8845
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	11.0	0.8870
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	11.1	0.8991
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	11.2	0.8809
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	16.4	0.8718
AT2G36330			Uncharacterised protein family...		Lus10002372 [exp]	16.5	0.8608
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	19.5	0.8626
AT2G35260			unknown protein		Lus10040089 [exp]	19.9	0.8711

Compare expression of checked genes

Lus10024004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.