Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53180 246 / 4e-74 NodGS nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023904 [exp] 387 / 5e-134 AT3G53180 285 / 3e-89 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10014407 [exp] 379 / 6e-124 AT3G53180 530 / 1e-175 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023900 [exp] 320 / 1e-101 AT3G53180 1148 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023905 [exp] 298 / 4e-99 AT3G53180 403 / 2e-134 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023906 [exp] 243 / 2e-80 AT3G53180 199 / 2e-60 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10033799 [exp] 107 / 4e-28 AT3G53180 104 / 2e-27 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023908 [exp] 0 / 1 AT3G53180 115 / 5e-31 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121000 [exp] 257 / 5e-78 AT3G53180 1176 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [flax] [poplar] GCS PF00120 [flax] [poplar] Gln-synt_C Glutamine synthetase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10024005 pacid=23160798 polypeptide=Lus10024005 locus=Lus10024005.g ID=Lus10024005.BGIv1.0 annot-version=v1.0 ATGGAGTTCAAGGAAGTGAGAGAAGCAGTAAACGATGTGTCTAACGGTTCTTTGAAGTACTTGGACGACGACAAAGCATCAGGAACAGCACAGATGTTTC CCTTGTTCGCCTCATCTGGGTTGATGCAGCAGGCATCCTTAGATGCCGAGAGTGGTGCCGGCTTGACTTACACATGTATGGCTTTCCCTTCATACATTGA TTCCCCTGCAGAGGGGTGTAACCTGGTTTGCGCCGGTGAGATCAGACTAATGCCTGATCTCTCTACTAAAACTAAGATCCCATGGCTGGAAAGGCAGGAA ATGGTTTTGTCTGACATGCATGTTAAGCCTGGTGAACCATGGGAGTATTGTCCAAGAGGGACATTGCGGAGGCTCTCGAAAATTCTCAAAGACGAATTCG ACTTGGTTATGAATGCAGGATTCGAGAATGAGTTTTTAATCTTGAAGAGTGTATCAAGGGATGGCAAAGATGATCAATGGGTGCCATTTGAATCAACAGC TTACTGCTCCACAGCAGGATTCGATGCTGCTTCCCCATTATTCCAAGACATGATTGATTTCCTCGATATACCATTCCAACAGGTGCATAAGGAAGCTGGG AAAGGTCAATTGGAGATAGCTCTGGAGTATTCAGCCTGTTTAAACTCTGCAGACAATGTGATTTATTCACGTGAAGTCATTCGCTCCGTAGCAAGGAAAC ATGGCTATATTGCCACTTTCGTCCCTAACTACTATCGGATTCAACCCAACATGTGGAGCGGAGCGTACCAATGCTGGGGGGAAGAGAACAAGGAAGCAGC ACTGCGGACTGCTCGTCCACCTGGCGTCCCAGACGGCCTAGTCAGCAATTTCGAGATCAAGTCTTTCGATGGCTGTGCAAATCCATACCTCGGCATGGCT GCCATCCTAGCTGCTGGCATTGATGGCCTCAGGAGGCGTCTTGAACTGCCTGAACCTGTTGGTATGAACCCTGCCGTCCTCAAAGGGAAGATCCAACGCT TGCCGAGGTCACTCTCCGAGTCCATGGAGGCTCTCGAGAACGATAGCGTGTTGGATGAGCTGATCGGGTCGAAACTTTGCGTTGCCATAAAAGCGGTTCG CAAGGCTGAGATCGAGTACTATTCCAAGAACAAGGAGGCTTTCAAGGAAATGATATTCCGTTACTAG
AA sequence Show only first row Show all	>Lus10024005 pacid=23160798 polypeptide=Lus10024005 locus=Lus10024005.g ID=Lus10024005.BGIv1.0 annot-version=v1.0 MEFKEVREAVNDVSNGSLKYLDDDKASGTAQMFPLFASSGLMQQASLDAESGAGLTYTCMAFPSYIDSPAEGCNLVCAGEIRLMPDLSTKTKIPWLERQE MVLSDMHVKPGEPWEYCPRGTLRRLSKILKDEFDLVMNAGFENEFLILKSVSRDGKDDQWVPFESTAYCSTAGFDAASPLFQDMIDFLDIPFQQVHKEAG KGQLEIALEYSACLNSADNVIYSREVIRSVARKHGYIATFVPNYYRIQPNMWSGAYQCWGEENKEAALRTARPPGVPDGLVSNFEIKSFDGCANPYLGMA AILAAGIDGLRRRLELPEPVGMNPAVLKGKIQRLPRSLSESMEALENDSVLDELIGSKLCVAIKAVRKAEIEYYSKNKEAFKEMIFRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10024005 [exp]	0	1
AT2G17030			F-box family protein with a do...		Lus10013995 [exp]	1.4	0.8610
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	4.7	0.8817
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	8.5	0.8601
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	12.6	0.8179
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10037039 [exp]	13.0	0.8245
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	13.9	0.8594
AT5G14090			unknown protein		Lus10037042 [exp]	15.7	0.8539
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	16.1	0.8474
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10021649 [exp]	18.4	0.8001
AT3G47570			Leucine-rich repeat protein ki...		Lus10006445 [exp]	18.8	0.7930

Compare expression of checked genes

Lus10024005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.