Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79580 75 / 2e-14 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G32770 64 / 6e-11 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT1G33280 64 / 7e-11 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT4G10350 64 / 1e-10 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT5G04410 64 / 2e-10 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT2G46770 63 / 3e-10 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G10480 62 / 7e-10 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT4G36160 61 / 7e-10 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT5G66300 61 / 8e-10 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT3G61910 61 / 9e-10 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025078 [exp] 750 / 0 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10010294 [exp] 134 / 7e-34 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10009858 [exp] 127 / 7e-32 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10031639 [exp] 123 / 7e-30 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10033699 [exp] 111 / 5e-26 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10008200 [exp] 99 / 2e-23 ND 43 / 6e-05 Lus10008240 [exp] 98 / 7e-22 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10031595 [exp] 94 / 2e-21 ND / Lus10033676 [exp] 97 / 5e-21 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 80 / 5e-16 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 80 / 8e-16 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G231300 [exp] 76 / 1e-14 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.010G176600 [exp] 73 / 9e-14 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.014G163600 [exp] 73 / 2e-13 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.008G080000 [exp] 72 / 2e-13 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G028300 [exp] 72 / 3e-13 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.019G063000 [exp] 67 / 2e-12 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.002G178700 [exp] 69 / 3e-12 AT2G46770 366 / 1e-125 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.012G126500 [exp] 67 / 8e-12 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10024006 pacid=23160772 polypeptide=Lus10024006 locus=Lus10024006.g ID=Lus10024006.BGIv1.0 annot-version=v1.0 ATGGCGATCGAACCAGACATACGGCGCCCGGGCCCGGAGACGAATTTACGGCCATCGGGGTTCAGGTTCTTGCCAACCGACGACGAACTACTCGGACATT ACCTCTACAACTACGTCAAACGCATATACGAACCGGAGGAGTTCTTCCCCATCCGCCACCGCGACATTCACAATGACGAGCCCTGGGAACTGTGGCAGAG CTCCCAAATCATCGGCGACAACGGCGGATCAGGGCCGGAGAACGACGTCTACTTCTTTGCCGACCTCAAGAAGAAGCGGGATACTGACAAGAATCATGGC CGGAAGATCGGGAAGGGCGGCGGGAACTGGCACGGCGAGGATAGAGGAAAAAAGTTGAATTTAGAAATCGATGACCCCGGCGGCGGAGAAGAATCTTCTC CGCCGGTTGCGAATTGGGTCGGGTTGAAGAAGAGGTTCAGTTACAGGAACGGTAATCTCAAGAGCGAACAACAAAAGTGGATTCTCCACGAATATAGCAT CAGTAATGATGGCGGATTGAATTACTTCAGCGAAGTTGTGTGTCTTCTGAGGAACAATGACTCGCCGACGGTGAGGCAAATCTCCGCCGCCTTTGTGAGG GTAAAACGGCCGATTGAGGAATATATTAATGTTAGGGCTGGAAAATCTGATTCTGAATCTGATGGTCGTACTAAAAAAAGGGTATGTTACTCCACTGCAT TGACCAGTCAGCCTTTTGCAGAAAACGTCGCGAGTTCGAACCCTACCTCTGTAAAAGAGGTATTGAATTCCGTCTTTTCGTCAAATTTTGATCCAGTGGT TCAACTCGACGAGAAGGTCACATGTTTAAACCCTAGCTCGAACCAATCGAACTATGCTCGGACTTCTTATAACTCTGTCTTTTCGTCGTCAGGGTTTGGT CTAGTAAGCCAACTCCCTCCTCTCGTCGAGAATATTATGTGTTCAAATCCTAGCTCGAACCAATTGGAGTGTGATCAGTATAATCCTTACCATATAAAGA ACAAAGCTCTAATGATCGAAGCTTCCTGCAGTTACCAAGACATGAGGATCTCTACATACCAGATCGATCCCCTTACCGAATTCGGCTCGATGTTCGAACA AAGCTCGACTAGCAATGCTGCTACTGCATCAGCATCAGAGTTCGGTTCGATGTTCAAACAAGGCTCGACTAGCAATACTACTACTGCACCAACATCAGAG TTCAGCTCGATGTTCGAACAAGGCTCGACTAGCAATGCTGCTACTGCATCAACATCAGAGTTCGGCTCGATGTTCGAACAAGGCTCGATGTTCGAACAAG GCTCGACTAGCAATGCTGCTACTGCATCAACATCAGAGCTCGGCTCGATGTTCAAACAAGGCTCGACTAGCAATGCTGCTACTGCATCAACATCAGAGTT TGACACAAAGTACGAGCCTATAACTTTCAATGAGATATGCAGAGGAGTTTATCGGGATTCAATGCCCTTGGGGTTATCTGCTTATGAAATCCAGAGCTTG TTGTATCCTTCTACTTCTGTGCAATGTAATGAGGAGGATCATCAGACCGGTAGGATCGAGTCGGCAGCCATTGATGGAGCTTTGGAACAGCAGCAACAGG TGCAGATACCAGAAGATGAACAACAGCCGCCATGGGCAGTGATTTCTAATGAGATTGTTTTGAAAGACGATGATGCTAGCTGGTTTGATGTCATTGATTT TGATTGTGATGATAGCTTGTTAAATGTCTCACAATACGATATTGAGCCACCTACCGGGTTTCTTTAG
AA sequence Show only first row Show all	>Lus10024006 pacid=23160772 polypeptide=Lus10024006 locus=Lus10024006.g ID=Lus10024006.BGIv1.0 annot-version=v1.0 MAIEPDIRRPGPETNLRPSGFRFLPTDDELLGHYLYNYVKRIYEPEEFFPIRHRDIHNDEPWELWQSSQIIGDNGGSGPENDVYFFADLKKKRDTDKNHG RKIGKGGGNWHGEDRGKKLNLEIDDPGGGEESSPPVANWVGLKKRFSYRNGNLKSEQQKWILHEYSISNDGGLNYFSEVVCLLRNNDSPTVRQISAAFVR VKRPIEEYINVRAGKSDSESDGRTKKRVCYSTALTSQPFAENVASSNPTSVKEVLNSVFSSNFDPVVQLDEKVTCLNPSSNQSNYARTSYNSVFSSSGFG LVSQLPPLVENIMCSNPSSNQLECDQYNPYHIKNKALMIEASCSYQDMRISTYQIDPLTEFGSMFEQSSTSNAATASASEFGSMFKQGSTSNTTTAPTSE FSSMFEQGSTSNAATASTSEFGSMFEQGSMFEQGSTSNAATASTSELGSMFKQGSTSNAATASTSEFDTKYEPITFNEICRGVYRDSMPLGLSAYEIQSL LYPSTSVQCNEEDHQTGRIESAAIDGALEQQQQVQIPEDEQQPPWAVISNEIVLKDDDASWFDVIDFDCDDSLLNVSQYDIEPPTGFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10024006 [exp]	0	1
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028003 [exp]	12.9	0.5696
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10036588 [exp]	15.5	0.5434
AT5G19580			glyoxal oxidase-related protei...		Lus10043231 [exp]	21.0	0.5664
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10015992 [exp]	29.0	0.5348
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015243 [exp]	44.5	0.5260
					Lus10018591 [exp]	50.8	0.5197
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10037513 [exp]	65.4	0.4756
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009775 [exp]	67.7	0.4907
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10032401 [exp]	252.5	0.4377
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028002 [exp]	269.3	0.4368

Compare expression of checked genes

Lus10024006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.