Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21740 224 / 1e-61 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 214 / 1e-58 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 211 / 5e-58 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 206 / 9e-57 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 197 / 2e-53 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 194 / 9e-53 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 189 / 2e-50 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 174 / 4e-45 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G52320 167 / 1e-44 unknown protein AT2G19090 171 / 5e-44 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025077 [exp] 1259 / 0 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 209 / 9e-58 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 208 / 8e-57 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041884 [exp] 201 / 1e-56 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10028431 [exp] 202 / 2e-55 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10025550 [exp] 194 / 3e-52 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 194 / 3e-52 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 194 / 3e-52 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 194 / 3e-52 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177200 [exp] 846 / 0 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 791 / 0 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 569 / 0 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 231 / 1e-64 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 220 / 1e-60 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G056700 [exp] 209 / 6e-58 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G112300 [exp] 206 / 4e-57 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G077700 [exp] 198 / 2e-53 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 197 / 3e-53 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 196 / 8e-53 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10024007 pacid=23160684 polypeptide=Lus10024007 locus=Lus10024007.g ID=Lus10024007.BGIv1.0 annot-version=v1.0 ATGGGATGTGTTGCTTCGAAGCTAGAGGAAGAGGAAGAAGTGGTGTCCATTTGTAAAGAGAGGAAACGCCAGCTGAAGCAAGCAGTAGAGAGGAGACTAG CTCTTGCTGAGGCTCATTGCAGGTACTGTCAATCTCTCTATGCAGTTTCCGCTGCTATAAAGCTGTTTGTGGCTCGCCATACTTCAGCTACTTCAACGTT CCTCATCACACTGCCTCCTCATTCCCCATCACTTCCTCTGAATAAAGAAGAAGAAGAAGAAGGAAAGAACTTGATAAACAACCCAATTTTTCTCGAAGAG AAGGTTTCTGACTCAACAACCAATGAAGATAACAACACCAACAACATAGCTTGTGAATCTTGTGACTCTTCAACGACTTCTTCGGATTCGAGTGAGGAAG AAGAGTGTAAAGAAGAGGCTGTGAATGTGATGCAACAACAACACCAACATCAACATCAACAGCAACAGCAGCATAATTATTCTTACTACTACATGCACAT GCCCCCACAAGCAGTGATTCCACAATCTCCAAGCCAGGATTTTGGGTGGGATTTCTTCAACCCTTTTGATGGGATGAGGCCAGAGATTATGAGTGGGTAC AGGAGGAGTTTGGATGACGATTTCAGGGCTGTGAGGGAACAGGAAGGGATTCCTGAGCTGGAAGAGGAAGAAGTAAGTAGGGAGAATGGACATGAGCAAA GGGTGTTTGTTGCTGGCGGTGAAGGGAACGGAGGAAGAGAAGGTATTGTAGACAATGGGGATGTGGGTAATGCTGTGGATGGAAATGCAGGATGTGTTGA AGAGAAGGGACATTCAGTTATGGAGTCCCCTGAGAAAGGGAGGGAATTGTTGGATGCATTGAAGGACATTGAGGACCATTTCGTTAAAGCTTACGATTCC GGGAAGGATGTTTCAAGGATGCTAGAGGCTAACAAGGTGTACTTGCAGACTGGCCAAGAAGAAGTGAAAGAGAATGCAAACAAAATTATCCTGGCTCTGC CATGGCACAGGTCAACTTCGTTCAAACCTTCATCGTGTAAAAGTCTCGTGGCATCAAGTTCTCGTAGCACATCTACTTGGACCGAGTATGCGAATGATCT CTTTGATGGTTGTGGTGGGATGAACTCTGGAAGCCATTCTTCAACACTTGGAAGGTTGTACGCATGGGAAAAGAAACTGTATCAAGAGGTTAAGGCTGGA GATGCAACGAGGAAACTGTACGAAAAGAAATGTTCAAAACTAAGAAGCCATGACGTCAGGGGTGTTGATGAGGTCAACATGGACAAGACAAGAGCGGCAC TGAAAGACTTGTATGCCAGGATCCTTGTAGCGATTCGCAGCGCTGAGTCGATCTCGAACAGGATTGAGAAGCTAAGAGATGAAGAACTGCAGCCTCAGAT AGTAGAACTACTAAAAGGCCTAACACGCACCTGGAAGACTATGCTGGAATGCCATGAAACTCAGAACAAAATTCTCTTACAAGTGAAATCTTTTGCATGC CCTTCAGCTGGGAAGTTCTGCAACGACTCGCACCGCCTTGCAACTCTCCAGCTCGAGGCGGAGCTACTAAACTGGCGTATGTGCTTCACAGACTACGTCA CAGCTTCAAAAGCCTACGTTGCAAGTCTACATTGCTGGCTCACCAAGTTCTTAGTTCCCGAAGTCGAATTCTACTCCAAGGCTAGAAACAGAAGCCTATT AAACTCATCATCATCGTCAATTCCTTCTCTTTCTCAATCAGGCCCTCCATTGCTTCGCATATGCAAGAATTGGCTATCATCAATGGAGAAGCTACCCGAT ACGCAGGTCTCTTCTGCATTAAAGAGCTTCGCGAAAGACGTGAGGGCTTTATGGGTTCAGCAAGGGGAAGAGCAGAAGCAGAAGAGGAAAGTAGAAAGCT TGGCTAAGGAGCTTGACAAAAGGACATTGTCGTTTCAGAAGACTGAAACCAGGCTACTTGAAACCAAGCTAATAGAGTATAACAACTACAATAACAAGGT TGGAATGGAGGAAAGTGAGAATCCTTTTGAGCAGTTAGCAGAGAGGAAAGATGAGTTGGATTTGCTGCAGATAAAGCTGGAGATGGAGAGGACTAAACAC CATAATCACATGCAGGAAACTTCCAGGATTACACTGAGTGGATTCCAGACAGGATTCTTGAGTGTGTTTGAGTCCTTGATTGAGTTCTCCAAAAGCTCCA TGAACATGTACAATTGTCTTGTTGTAGTGAACGACCAGAGCAACAGTGGGAAGCTGGAGAGTCAACCGTATAATACTACAGAGAGCTCCCAGGTTGGAGA AAATGGTGACAGGTGA
AA sequence Show only first row Show all	>Lus10024007 pacid=23160684 polypeptide=Lus10024007 locus=Lus10024007.g ID=Lus10024007.BGIv1.0 annot-version=v1.0 MGCVASKLEEEEEVVSICKERKRQLKQAVERRLALAEAHCRYCQSLYAVSAAIKLFVARHTSATSTFLITLPPHSPSLPLNKEEEEEGKNLINNPIFLEE KVSDSTTNEDNNTNNIACESCDSSTTSSDSSEEEECKEEAVNVMQQQHQHQHQQQQQHNYSYYYMHMPPQAVIPQSPSQDFGWDFFNPFDGMRPEIMSGY RRSLDDDFRAVREQEGIPELEEEEVSRENGHEQRVFVAGGEGNGGREGIVDNGDVGNAVDGNAGCVEEKGHSVMESPEKGRELLDALKDIEDHFVKAYDS GKDVSRMLEANKVYLQTGQEEVKENANKIILALPWHRSTSFKPSSCKSLVASSSRSTSTWTEYANDLFDGCGGMNSGSHSSTLGRLYAWEKKLYQEVKAG DATRKLYEKKCSKLRSHDVRGVDEVNMDKTRAALKDLYARILVAIRSAESISNRIEKLRDEELQPQIVELLKGLTRTWKTMLECHETQNKILLQVKSFAC PSAGKFCNDSHRLATLQLEAELLNWRMCFTDYVTASKAYVASLHCWLTKFLVPEVEFYSKARNRSLLNSSSSSIPSLSQSGPPLLRICKNWLSSMEKLPD TQVSSALKSFAKDVRALWVQQGEEQKQKRKVESLAKELDKRTLSFQKTETRLLETKLIEYNNYNNKVGMEESENPFEQLAERKDELDLLQIKLEMERTKH HNHMQETSRITLSGFQTGFLSVFESLIEFSKSSMNMYNCLVVVNDQSNSGKLESQPYNTTESSQVGENGDR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	0	1
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10014704 [exp]	1.0	0.9721
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10026114 [exp]	2.6	0.9666
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	3.0	0.9649
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	4.5	0.9713
AT5G59010			Protein kinase protein with te...		Lus10016454 [exp]	6.2	0.9390
AT3G22810			Plant protein of unknown funct...		Lus10014703 [exp]	6.5	0.9563
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	7.3	0.9708
AT4G36970			Remorin family protein (.1)		Lus10027302 [exp]	8.5	0.9165
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	8.5	0.9704
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	9.7	0.9681

Compare expression of checked genes

Lus10024007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.