Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38520 605 / 0 Protein phosphatase 2C family protein (.1.2) AT3G51370 578 / 0 Protein phosphatase 2C family protein (.1.2) AT5G66080 563 / 0 Protein phosphatase 2C family protein (.1) AT3G12620 500 / 1e-177 Protein phosphatase 2C family protein (.1.2) AT3G55050 483 / 5e-171 Protein phosphatase 2C family protein (.1.2) AT3G17090 427 / 4e-149 Protein phosphatase 2C family protein (.1.2) AT5G02760 420 / 2e-146 Protein phosphatase 2C family protein (.1) AT4G33920 392 / 3e-135 Protein phosphatase 2C family protein (.1) AT5G06750 377 / 4e-129 Protein phosphatase 2C family protein (.1.2.3) AT3G16560 152 / 2e-41 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025076 [exp] 824 / 0 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 687 / 0 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 682 / 0 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 601 / 0 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 506 / 3e-180 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 504 / 2e-179 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 495 / 7e-176 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10037779 [exp] 457 / 5e-161 AT3G17090 562 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10014024 [exp] 434 / 7e-152 AT3G12620 476 / 1e-168 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137400 [exp] 689 / 0 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 684 / 0 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 644 / 0 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 625 / 0 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 494 / 3e-175 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 492 / 2e-174 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 460 / 3e-162 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 447 / 4e-157 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 438 / 2e-153 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G297200 [exp] 396 / 9e-137 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10024008 pacid=23160764 polypeptide=Lus10024008 locus=Lus10024008.g ID=Lus10024008.BGIv1.0 annot-version=v1.0 ATGTTATCTGGGTTGATGAGCTTTCTGAGGGCCTGTTTTGGACCGAGGTCGGATCGTGATGGTCACATCGAGACAGGGGGTCGCCAAGACGGACTGTTAT GGTACAAGGACCATGGACACCATGTGAATGGTGAGTTCTCCATGGCAGTAGTGCAGGCCAACAGTCTGCTTGAGGACCAGAGCCAGCTTGAGTCAGGAAG TTTGAGCTTGAGGCAGGATTCTGGTCCATTTGGTACTTTCGTTGGTGTTTATGATGGGCATGGTGGCCCTGAGACTTCCCGCTATGTTAATGATCACCTT TTTCAGCATCTCAAAAGATTTACTTCGGAGCAACAGTCAATGTCAGCAGAGGTGATACGGAAAGCATTTCAAGCAACAGAAGAAGGATTTGTCTCGCTTG TTGCAAGGCAATGGCCTATGAAGCCACAGATTGCAGCAGTTGGAACTTGCTGCCTGGTGGCCGTAATTTGCAATGAGACTCTTTATGTCGCAAACCTTGG CGACTCCCGTGCTGTTTTAGGTAGAGCTGTGAAGGCAACTGGAGAAGTTTTGTCGATACAGCTTTCAGATGAGCACAATGTTTGTCATGAGACTGTGAGG CAAGAGCTTTTTGCTTCGCACCCTGAAGACCCGCAGATCGTGGTTTTAAAGCATAATGTATGGCGTGTCAAAGGCATTATCCAGATATCGAAATCCATAG GTGACGTATATCTGAAGAAGTCAGAGTTCAACAGGGAGCCTCTATACGCAAAGTTCAGGGTTCGGGAACCGTTCAAGAAGCCTATATTGAGCGCTGACCC TTCCATTTCGGAATATAAGCTGCAGCCAGTAGATCGATTCGTCATTCTCGCATCTGATGGGCTATGGGAGCACTTAAGCAATCAAGAAGCGGTCGATATA GTTCAGAATCATCCACGGAATGGAAGTGCAAAGAGGCTGGTGAAGGCTGCGCTGCAAGAAGCAGCAAAGAAGAGGGAAATGAGGTACTCCGACTTGAAGA AGATTGACCGTGGAGTCCGGCGCCATTTCCACGACGACATAACAGTGATCGTGGTGTTCCTCGACTCTAACCTTGTGAGCCGGGTAACGAACGGCACCGG TGCCGGTCTTGGGAACAAGGCATCTAACGTATCGGTCAGAGGGGGCGGAATCAGCATCCCCTCAAACTCGCTAGCTCCTTGTACGACTCCGGGAAACGCC AATTGA
AA sequence Show only first row Show all	>Lus10024008 pacid=23160764 polypeptide=Lus10024008 locus=Lus10024008.g ID=Lus10024008.BGIv1.0 annot-version=v1.0 MLSGLMSFLRACFGPRSDRDGHIETGGRQDGLLWYKDHGHHVNGEFSMAVVQANSLLEDQSQLESGSLSLRQDSGPFGTFVGVYDGHGGPETSRYVNDHL FQHLKRFTSEQQSMSAEVIRKAFQATEEGFVSLVARQWPMKPQIAAVGTCCLVAVICNETLYVANLGDSRAVLGRAVKATGEVLSIQLSDEHNVCHETVR QELFASHPEDPQIVVLKHNVWRVKGIIQISKSIGDVYLKKSEFNREPLYAKFRVREPFKKPILSADPSISEYKLQPVDRFVILASDGLWEHLSNQEAVDI VQNHPRNGSAKRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRVTNGTGAGLGNKASNVSVRGGGISIPSNSLAPCTTPGNA N

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	0	1
AT5G06440			unknown protein		Lus10021251 [exp]	1.4	0.8255
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	8.8	0.6845
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	14.4	0.7451
AT4G10550			Subtilase family protein (.1.2...		Lus10035478 [exp]	14.9	0.7598
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	15.2	0.7719
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	19.0	0.7421
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	19.9	0.7369
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10042143 [exp]	24.0	0.7569
AT4G14385			unknown protein		Lus10011821 [exp]	27.5	0.7519
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10023543 [exp]	27.5	0.7208

Compare expression of checked genes

Lus10024008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.