Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39250 74 / 1e-17 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT2G21650 74 / 1e-17 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT1G75250 74 / 1e-17 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT1G19510 67 / 6e-15 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT4G36570 55 / 8e-11 MYB ATRL3 RAD-like 3 (.1) AT2G18328 55 / 1e-10 MYB ATRL4 RAD-like 4 (.1) AT5G58900 52 / 2e-08 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 52 / 4e-08 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G05790 52 / 4e-08 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 51 / 6e-08 MYB Duplicated homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014307 [exp] 110 / 3e-32 AT4G39250 82 / 5e-22 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10041744 [exp] 88 / 2e-23 AT4G39250 53 / 1e-11 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10023568 [exp] 81 / 4e-20 AT4G39250 123 / 5e-38 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10040450 [exp] 80 / 5e-20 AT1G75250 98 / 5e-28 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10040453 [exp] 79 / 1e-19 AT2G21650 115 / 4e-35 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) Lus10002538 [exp] 78 / 4e-19 AT1G75250 112 / 1e-33 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10007152 [exp] 78 / 4e-19 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10010831 [exp] 78 / 4e-19 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10033212 [exp] 77 / 2e-18 AT1G75250 107 / 2e-31 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G117200 [exp] 81 / 2e-20 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.005G122200 [exp] 80 / 4e-20 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155866 [exp] 80 / 4e-20 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G035000 [exp] 80 / 6e-20 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025100 [exp] 79 / 7e-20 AT1G75250 91 / 1e-25 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G228000 [exp] 76 / 1e-18 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G023800 [exp] 75 / 3e-18 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025200 [exp] 74 / 9e-18 AT4G39250 99 / 1e-28 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.002G260000 [exp] 72 / 7e-17 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.004G155400 [exp] 69 / 1e-15 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024009 pacid=23141522 polypeptide=Lus10024009 locus=Lus10024009.g ID=Lus10024009.BGIv1.0 annot-version=v1.0 ATGGGAGCAGAAGAAGAAGTAGTGTCTTCTTGGACTCCGAAGATGAACAAGCTGTTCGAGGTTGCCCTGGCCATGTACGATGAGGATATGCCTGATAGAT GGGAGGTCATAGCCGATATTGTCGGCGGCGGAACTACTCCCGAGGAAGTTGAGACCAGGTACGACCTCCTCGTTGATGATCTGGAGCGGATTGAGATGGA CCAAGTCTCACTCCCTGATTACCACGACGAAGAAAGCTCCAATGACGACGACAATGATGATGATTACTACGTCGACGAGGACACATCCGACGAGGAACAT AGCCAGCAAACAGAGCTAAGTCCCGATCCGGCGGCCGAACGAGGCGCGACCTTAGGGGCGAGGAAATGGATGTACTTGGCGGTGGAATTCATTGCAGCTG ATCAGAGTGGTTGTCGTTTCATCATGAGGAAATTGGGAAAGTCGAAGTACACTGCCACCTTATCGTCGACGTTGACCGGCGACTTCCCTTTCGCCGTCCG GTGA
AA sequence Show only first row Show all	>Lus10024009 pacid=23141522 polypeptide=Lus10024009 locus=Lus10024009.g ID=Lus10024009.BGIv1.0 annot-version=v1.0 MGAEEEVVSSWTPKMNKLFEVALAMYDEDMPDRWEVIADIVGGGTTPEEVETRYDLLVDDLERIEMDQVSLPDYHDEESSNDDDNDDDYYVDEDTSDEEH SQQTELSPDPAAERGATLGARKWMYLAVEFIAADQSGCRFIMRKLGKSKYTATLSSTLTGDFPFAVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10024009 [exp]	0	1
					Lus10001127 [exp]	6.5	0.8130
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10031941 [exp]	10.0	0.8742
					Lus10007598 [exp]	18.5	0.8326
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10011056 [exp]	23.9	0.8714
AT4G22310			Uncharacterised protein family...		Lus10032564 [exp]	42.7	0.7930
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10041802 [exp]	158.7	0.7767
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10026966 [exp]	205.4	0.7910
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10013572 [exp]	216.1	0.7859

Compare expression of checked genes

Lus10024009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.