Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49555 607 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G06820 75 / 3e-14 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT1G57770 55 / 5e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041743 [exp] 712 / 0 AT5G49555 933 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10014308 [exp] 549 / 0 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10026016 [exp] 500 / 2e-175 AT5G49555 494 / 2e-171 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10029347 [exp] 77 / 9e-15 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10016199 [exp] 72 / 3e-13 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10037348 [exp] 50 / 4e-06 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10035770 [exp] 44 / 0.0003 AT1G57770 832 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025300 [exp] 660 / 0 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.016G066000 [exp] 75 / 4e-14 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.006G199600 [exp] 72 / 3e-13 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.003G005800 [exp] 61 / 1e-09 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024010 pacid=23141505 polypeptide=Lus10024010 locus=Lus10024010.g ID=Lus10024010.BGIv1.0 annot-version=v1.0 ATGTGGCGACGGAGCTTCAGCACCGGACCGGCCTCCGCCTCCATGGAACTGGCAGGCAAGAAATGGGACGCATTAGTGATCGGTGGCGGCCACAACGGCT TGGCCGGCGCTTCCTACCCTTCTCGAGCTGGCCTCTCCTTCGCCCTCCTTGAGCTTAATCGCTCTGAAATCTCCAAGTTCTCTAAACGCGACGCCGAAGC TTATCCCAGGGATTTCATGGACCTTCTGCTGTCGCCGTCTTCAAAAGTTTTGAATAACTGGTTTGAGGCAGATGTGTTGAAGGCGACCTTAGGAACTGAT GCTATTATAGGTACTACGGGTAGTGTACATACACCGGGTAGTGGATATGTTCTGCTAAATCATGTGATGGGAGAGACTGACGGCGATCGTGGAATTTGGT CTTATGTTGAAGGAGGAATGGGCTCAGTATCACTGGCTATTAGTAATGCTGCTAAGGAAGCTGAGGCGCATATATTGACAAGTGCAGAGGTTTCACAACT GGTTATCAAGGACTCTGGTGCAGCTAGTGGGGTGGTGCTGGCTGATGGTACAGAAATCACCTCTTCAATAGTTCTGTCAAATGCTACGCCTTACAAGACT TTCATGGAATTAGTGCCCCAAAATGTTCTTCCTGATGAATTTACCCTTAGTGTGAAGCATTCTGACTATAGTTCTGCAACTACAAAAATAAACCTGGCCG TCAATAAACTGCCTGAGTTTCAATGTTGCAAGTTGAGCCATCCTGATGCTGGACCTCAGCATATGGGCACTATTCATATTGGTTCGGAGAGCATGGAAGA AATTGATTCAGCCTGCCAGGACGCTTTAAATGGAGTACCGTCTAGAAGACCAGTTATTGAGATGACAATTCCTTCCGTTCTCGACAAGACTATTTCTCCT CCTGGTAAACATGTAATCAACTTGTTTGTGCAGTACACTCCTTATAAGCCATCAGATGGGAGCTGGTCGGATCCTGCTTACCGGGAATCGTTTGCACAAA GGTGCTTCAGCTTGATTGATGAATTTGCACCTGGCTTCAGCTCATCAATAATCGACTACGACATGCTGGCACCACCTGACCTCGAAAGAGAAATTGGTTT GACAGGAGGTAACATATTCCGCGGCGCTATGAGGTTGGATTCCTTATTCCTTATGCGACCAGTAAAAGGATGGTCGAGTTACAGAACTCCTGTGCAAGGG CTGTACCTTTGCGGCAGTGGAACTCACCCAGGAGGTGGTGTGATGGGCGCACCTGGACGTAATGCTGCTACTGTGGTTCTTCGGGACATCAAGAAGACGC CATGA
AA sequence Show only first row Show all	>Lus10024010 pacid=23141505 polypeptide=Lus10024010 locus=Lus10024010.g ID=Lus10024010.BGIv1.0 annot-version=v1.0 MWRRSFSTGPASASMELAGKKWDALVIGGGHNGLAGASYPSRAGLSFALLELNRSEISKFSKRDAEAYPRDFMDLLLSPSSKVLNNWFEADVLKATLGTD AIIGTTGSVHTPGSGYVLLNHVMGETDGDRGIWSYVEGGMGSVSLAISNAAKEAEAHILTSAEVSQLVIKDSGAASGVVLADGTEITSSIVLSNATPYKT FMELVPQNVLPDEFTLSVKHSDYSSATTKINLAVNKLPEFQCCKLSHPDAGPQHMGTIHIGSESMEEIDSACQDALNGVPSRRPVIEMTIPSVLDKTISP PGKHVINLFVQYTPYKPSDGSWSDPAYRESFAQRCFSLIDEFAPGFSSSIIDYDMLAPPDLEREIGLTGGNIFRGAMRLDSLFLMRPVKGWSSYRTPVQG LYLCGSGTHPGGGVMGAPGRNAATVVLRDIKKTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10024010 [exp]	0	1
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	1.7	0.9181
AT3G48660			Protein of unknown function (D...		Lus10041549 [exp]	3.7	0.8678
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10034167 [exp]	5.9	0.8590
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10017742 [exp]	6.9	0.8517
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	8.7	0.8917
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	11.0	0.8972
AT1G70350			unknown protein		Lus10029157 [exp]	13.0	0.8625
AT1G11320			unknown protein		Lus10013574 [exp]	16.1	0.8978
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	16.5	0.8837
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	18.2	0.8802

Compare expression of checked genes

Lus10024010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.