Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50860 214 / 5e-72 Clathrin adaptor complex small chain family protein (.1) AT2G19790 89 / 7e-23 SNARE-like superfamily protein (.1) AT2G17380 88 / 2e-22 AP19 associated protein 19 (.1) AT1G47830 87 / 3e-22 SNARE-like superfamily protein (.1) AT4G35410 87 / 4e-22 Clathrin adaptor complex small chain family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041742 [exp] 240 / 7e-82 AT3G50860 278 / 6e-97 Clathrin adaptor complex small chain family protein (.1) Lus10042352 [exp] 87 / 2e-21 AT2G17380 297 / 3e-104 associated protein 19 (.1) Lus10026316 [exp] 86 / 4e-21 AT2G17380 297 / 7e-105 associated protein 19 (.1) Lus10024337 [exp] 86 / 7e-21 AT1G47830 274 / 5e-95 SNARE-like superfamily protein (.1) Lus10012924 [exp] 84 / 9e-21 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1) Lus10035004 [exp] 82 / 4e-20 AT2G19790 262 / 6e-92 SNARE-like superfamily protein (.1) Lus10003641 [exp] 82 / 9e-20 AT4G35410 251 / 8e-87 Clathrin adaptor complex small chain family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025400 [exp] 222 / 7e-75 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1) Potri.005G122900 [exp] 219 / 5e-74 AT3G50860 286 / 1e-100 Clathrin adaptor complex small chain family protein (.1) Potri.005G238701 [exp] 89 / 7e-23 AT1G47830 275 / 8e-97 SNARE-like superfamily protein (.1) Potri.002G022900 [exp] 88 / 1e-22 AT1G47830 278 / 6e-98 SNARE-like superfamily protein (.1) Potri.012G052000 [exp] 89 / 2e-22 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 88 / 2e-22 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2) Potri.006G149100 [exp] 87 / 4e-22 AT2G19790 287 / 1e-101 SNARE-like superfamily protein (.1) Potri.002G001800 [exp] 83 / 4e-20 AT2G17380 278 / 3e-97 associated protein 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10024011 pacid=23141443 polypeptide=Lus10024011 locus=Lus10024011.g ID=Lus10024011.BGIv1.0 annot-version=v1.0 ATGATAAAAGCGACGATGGTGATGAACACTCAAGGGAAGCCTCGGCTCACGAAATTCTACGATTTTATGGGTTTCTGGTGCGTAGTTTTGTGCGGTAGAG CAGATAATGTTAGCAATTTCATGGATGCGGATTCAATTTTCGGCCCGGATAGTCGTCTTGTGTACAAGCACTTCGCAACTCTCTACTTCGTCTTTGTGTT CGATAGTTCAGAAAACGAGCTTGCCATGCTTGATCTCATCCAAGTTTTCGTGGAGACGCTAGACAAATGTTTCAGAAATGTGTGTCAGCTTGATATAGTG TTCAATTATAGCAAGCTGCATACCATTTTAGATGAGATCATCTTCGGAGGCCAAGTGCTGGAGACGAGTTCTGCTGAGGTTATGAAGGCAAGAATCAGCT TCAAATTCTATAGGATTAGTCACCAAAACAGTTTCGGGCTGGAGGAGGTAGCGCAAATTTTTGAAGAATTCGACGAGGAAAACCTGTACAACCCGATAGT GTCTCAAGGCATTGATTCCGTCGATGGGAAGAGTTGA
AA sequence Show only first row Show all	>Lus10024011 pacid=23141443 polypeptide=Lus10024011 locus=Lus10024011.g ID=Lus10024011.BGIv1.0 annot-version=v1.0 MIKATMVMNTQGKPRLTKFYDFMGFWCVVLCGRADNVSNFMDADSIFGPDSRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFRNVCQLDIV FNYSKLHTILDEIIFGGQVLETSSAEVMKARISFKFYRISHQNSFGLEEVAQIFEEFDEENLYNPIVSQGIDSVDGKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50860			Clathrin adaptor complex small...		Lus10024011 [exp]	0	1
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	14.1	0.7669
AT5G61310			Cytochrome c oxidase subunit V...		Lus10002429 [exp]	14.1	0.7680
AT5G35080			unknown protein		Lus10039972 [exp]	16.0	0.7889
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	21.3	0.7794
AT1G17970			RING/U-box superfamily protein...		Lus10021722 [exp]	25.7	0.7206
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	34.4	0.7552
AT1G43900			Protein phosphatase 2C family ...		Lus10029745 [exp]	36.4	0.7360
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Lus10009755 [exp]	36.5	0.7535
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10021433 [exp]	37.6	0.7617
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10036125 [exp]	37.9	0.7532

Compare expression of checked genes

Lus10024011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.