Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 42 / 3e-05 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10020927 [exp] 41 / 4e-05 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10003724 [exp] 39 / 0.0002 AT1G70530 45 / 7e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10008656 [exp] 38 / 0.0007 AT4G05200 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10006965 [exp] 37 / 0.0009 ND 38 / 7e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10024012 pacid=23141542 polypeptide=Lus10024012 locus=Lus10024012.g ID=Lus10024012.BGIv1.0 annot-version=v1.0 ATGAAGACGACCTCGGCAGTCAATATTGCTTTCCTGACAAGTGCACTTTTTGTTCTGGCGGCCGCCACTTTCGTAGACGGAGCTGATCCCGCTGATCTGT TCTGCAACAGCAAAAAGTTCAGTGGCGATGAAGGTGACCTCGCCATAGCCACGAGGGACAAACTCCTCGACCGCCTGGTAGCCAAACAACGATTCTGCAC CAAGCAAAAAGGCGACACTACGCTTTTCGGATTAGCCAGTTGTGCCGCCAAATCCACGACCAGTCAGTGCTCTGTTTGTCTAGATACCGCTCGATTTGTT CTGAAACATAACTGCGATGACCCAATCGGGGCCCGAGTTACTGTGAAGATCCCAAAGACCAACAAGAGCTGTTTCATGCAATTTGAGACCACCAAATTTT GCTAG
AA sequence Show only first row Show all	>Lus10024012 pacid=23141542 polypeptide=Lus10024012 locus=Lus10024012.g ID=Lus10024012.BGIv1.0 annot-version=v1.0 MKTTSAVNIAFLTSALFVLAAATFVDGADPADLFCNSKKFSGDEGDLAIATRDKLLDRLVAKQRFCTKQKGDTTLFGLASCAAKSTTSQCSVCLDTARFV LKHNCDDPIGARVTVKIPKTNKSCFMQFETTKFC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024012 [exp]	0	1
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	1.7	0.8924
					Lus10003479 [exp]	2.0	0.8756
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10038834 [exp]	2.8	0.8244
AT1G11410			S-locus lectin protein kinase ...		Lus10007610 [exp]	6.5	0.7860
AT3G46570			Glycosyl hydrolase superfamily...		Lus10000070 [exp]	6.9	0.8058
					Lus10019512 [exp]	7.1	0.7764
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10004224 [exp]	8.1	0.7318
					Lus10015336 [exp]	8.7	0.8263
AT5G58820			Subtilisin-like serine endopep...		Lus10002245 [exp]	16.0	0.6922
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10003459 [exp]	16.2	0.7772

Compare expression of checked genes

Lus10024012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.