Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66760 1062 / 0 SDH1-1 succinate dehydrogenase 1-1 (.1) AT2G18450 1027 / 0 SDH1-2 succinate dehydrogenase 1-2 (.1) AT5G14760 219 / 4e-62 AO L-aspartate oxidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041739 [exp] 1116 / 0 AT5G66760 1153 / 0.0 succinate dehydrogenase 1-1 (.1) Lus10014539 [exp] 219 / 5e-62 AT5G14760 994 / 0.0 L-aspartate oxidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026400 [exp] 1085 / 0 AT5G66760 1180 / 0.0 succinate dehydrogenase 1-1 (.1) Potri.005G123900 [exp] 1067 / 0 AT5G66760 1136 / 0.0 succinate dehydrogenase 1-1 (.1) Potri.001G348600 [exp] 221 / 5e-63 AT5G14760 996 / 0.0 L-aspartate oxidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02910 [flax] [poplar] Succ_DH_flav_C Fumarate reductase flavoprotein C-term CL0063 [flax] [poplar] NADP_Rossmann PF00890 [flax] [poplar] FAD_binding_2 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10024015 pacid=23141556 polypeptide=Lus10024015 locus=Lus10024015.g ID=Lus10024015.BGIv1.0 annot-version=v1.0 ATGTGGCGGTGTGTCGCTCGCGGCCTTCGCGTTCCTTCTTCTTCTTCTTCTTCTTCAAAGCGGTCCGTCCCAAACGACTCCATTAGATCTCACATTACCA GATTCTTCTCTACAAGCCCGGTACAGTTTGCCTTTCCCTCCAATGATCGCTTTCTTCTTATAATCTATATCTCGATTTCGAATATTCTCTATGCTGAAAC ACTTGCTAGAAGATTGAAAGCGCGACTCGGCAGTCTCTCGTTGCGGGTCCCTTGGGATGCCCACACAGAAGTGCCTTTCGTACTTGGTTCTACTGCTTCA TATACAATTGTCGATCATACCTATGACGCGGTTGTGGTAGGCGCTGGTGGCGCTGGGTTGAGAGCTGCCATAGGTCTTTCAGAGCATGGATTTAACACAG CTTGCATCACCAAACTTTTCCCCACCCGTTCACACACAGTTGCAGCACAGGGTGGTATCAATGCTGCACTGGGAAATATGTCCGAGGATGATTGGAGATG GCACATGTATGACACTGTCAAGGGTAGCGATTGGTTAGCACCAAAGGCTGTAATTGAACTTGAGAACTATGGGTTACCATTCTCTCGTACAGAGGATGGA AAGATCTATCAACGAGCATTTGGTGGTCAAAGTCTTGATTTTGGAAAAGGTGGACAAGCATACCGTTGTGCATGTGCTGCGGACAGAACTGGACATGCCC TGCTACATACTCTATATGGCCAAGCAATGAAACACAACACTCAATTTTTTGTGGAATATTTTGCTTTGGACTTGTTGATGAACAGCGACGGAAGCTGTCA GGGGGTGATTGCCCTTAATATGGAAGATGGAACATTGCATCGGTTCCGTTCTGCTTCAACAATTCTAGCCACAGGGGGCTATGGTAGGGCATACTTCTCG GCGACCTCAGCTCATACATGCACGGGAGATGGAAATGCCATGGTTGCGAGAGCTGGACTCCCTCTTGAGGATCTGGAGTTCGTTCAATTTCACCCTACAG GCATTTATGGGGCTGGATGCCTCATTACTGAAGGATCTCGCGGTGAAGGTGGTATTCTCAGAAATAGTGAAGGGGAACGGTTCATGGAAAGATATGCCCC TACAGCTAAGGATCTTGCTTCAAGAGATGTTGTTTCAAGATCCATGACCATGGAAATCCGGGAGGGTCGTGGTGTAGGACCTATGAAGGACCATATATAT CTGCATCTAAATCATTTGCCTCCAGAAGTACTGAAGGAGAGGCTTCCCGGTATCTCTGAAACTGCTGCCATTTTTGCTGGTGTAGATGTTACAAAGGAAC CTATCCCTGTCCTACCTACTGTCCATTATAATATGGGTGGAATTCCCACAAACTATCATGGAGAGGTAGTTACTATTAAAGGCAATGATCCAGATGCTGT AATTCCTGGATTAATGGCTGCTGGAGAGGCAGCTTGTGCGTCTGTTCATGGAGCTAACCGTCTGGGAGCAAATTCTCTTCTTGATATTGTTGTTTTTGGC CGTGCATGGGAGAAACAGAAGCCTTTAGAAGCAGATGCTGGAGAGAAGACTGTTGCATGGCTGGACAAGATAAGAAATTCAAATGGATCACTTCCAACTT CCCAAATTCGGTTAAATATGCAGAGAGTAATGCAAAATAATGCTGCAGTCTTCCGTACACAGGAAACTTTGGAAGAAGGTTGCCAGCTGATTGACAAAAC TTGGGAAAGCTTCCATGACGTTCAGTTGAAAGACAGGAGTTTGATATGGAACTCTGACTTGATTGAGACGATTGAATTGGAAAACCTGCTAATAAATGCA TGCGTCACAATGCATTCTGCTGAAGCTCGTAAAGAGAGCAGAGGTGCACATGCCCGCGAGGACTTCACCAAAAGAGACGATGAGAAGTGGATGAAGCATA CTTTAGGATATTGGGAAAACGAAAAGGTCCGGCTGGATTACAGGCCAGTCCATATGAACACATTGGATGACGAGGTTGAAACCTTCCCTCCTAAAGCTCG TGTGTACTGA
AA sequence Show only first row Show all	>Lus10024015 pacid=23141556 polypeptide=Lus10024015 locus=Lus10024015.g ID=Lus10024015.BGIv1.0 annot-version=v1.0 MWRCVARGLRVPSSSSSSSKRSVPNDSIRSHITRFFSTSPVQFAFPSNDRFLLIIYISISNILYAETLARRLKARLGSLSLRVPWDAHTEVPFVLGSTAS YTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLAPKAVIELENYGLPFSRTEDG KIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFRSASTILATGGYGRAYFS ATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPMKDHIY LHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGNDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFG RAWEKQKPLEADAGEKTVAWLDKIRNSNGSLPTSQIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVQLKDRSLIWNSDLIETIELENLLINA CVTMHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWENEKVRLDYRPVHMNTLDDEVETFPPKARVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Lus10024015 [exp]	0	1
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	3.9	0.8908
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	9.1	0.8824
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	12.7	0.8773
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	14.5	0.8644
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10042326 [exp]	15.5	0.8736
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	16.5	0.8757
AT3G50790			esterase/lipase/thioesterase f...		Lus10017332 [exp]	18.6	0.7843
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	21.8	0.8567
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	21.9	0.8532
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	22.0	0.8612

Compare expression of checked genes

Lus10024015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.