Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50660 637 / 0 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 300 / 2e-97 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 258 / 8e-81 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G12740 249 / 1e-77 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 225 / 2e-68 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 222 / 2e-67 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT5G14400 219 / 2e-67 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT4G36380 211 / 1e-62 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT5G48000 204 / 1e-60 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT4G19230 202 / 8e-60 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041737 [exp] 481 / 2e-170 AT3G50660 481 / 9e-170 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 347 / 6e-115 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10041738 [exp] 291 / 2e-98 AT3G50660 233 / 3e-75 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 293 / 7e-95 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10014850 [exp] 287 / 5e-92 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 285 / 2e-91 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10024495 [exp] 259 / 1e-81 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10031866 [exp] 249 / 3e-77 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10031295 [exp] 248 / 7e-77 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124000 [exp] 676 / 0 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 673 / 0 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.014G171700 [exp] 371 / 5e-125 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 355 / 1e-118 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.008G067500 [exp] 311 / 8e-102 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 307 / 4e-100 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.003G038200 [exp] 268 / 1e-84 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.001G200100 [exp] 266 / 6e-84 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G122500 [exp] 264 / 3e-83 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.017G154600 [exp] 263 / 4e-83 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024016 pacid=23141579 polypeptide=Lus10024016 locus=Lus10024016.g ID=Lus10024016.BGIv1.0 annot-version=v1.0 ATGTCTGAGTCGGAGCTTCTTCTTACCGGACTATTCCTTCTCCCTTCCCTCTTCACTCTGCTTCTCATCCTAATCCTCAAAACCAAAAACAACAACCACC ACCACAGGTTCAATCTCCCTCCGGGGAGCTCCGGCTGGCCATTCATCGGCGAAACCATCGGCTACTTGCGCCCTTACTCCGCTACTTCCATTGGTCATTT CATGGAACACCACGTCTCTAGGTACGGGAAGATATACCGGTCGACTTTGTTCGGGGAGCCGACGATAGTGTCCGCTGACGCCGGTCTGAACCGGTTTATT CTCCAGAACGAAGGCAGGCTGTTCGAGTGCAGCTACCCGAGGAGCATCGGCGGGATATTGGGGAAATGGTCGATGCTTGTTTTGGTTGGAGATATGCATC GTAACATGAGAATCATATCCCTCAACTTCCTCAGCCACGCTAGGATCCGTACGCATCTCCTCAAAGAAGTTGAGCGCCACACTCTCCTTGTTCTCTCTTC CTGGAACCACAATTCCACTTTCTCCGCTCAGGACGAAGCCAAGAAGTTCACATTCAATCTAATGGCGAAGCATATAATGAGTTTGGATCCTGGGAAGCCA GAGACAGAGCAGCTGAAATCGGAATACATCACTTTCATGAAAGGAGTTGTTTCTCCTCCCCTGAATTTCCCTGGAACTGCTTACAGGCGAGCGTTGAAGT CACGGTCGACGATTCTGAAGTTTATAGAGAGGAAAATGGAGGAGAGGAAAAAGAGGAGCAACGAGGTTGGGGAAGACGACGATCTTCTGGGATGGGAGGA GCACAGTGGGATTGCGAAGGCAAAGAAGCATGCAGGGGAGACTGAACTGAACTGGGATGATTACAAGAAAATGGAGTTCACCCAATGCGTTATCAGTGAG ACGCTGAGACTTGGGAACGTGGTGAGGTTTCTACACAGGAAGGCTCTGAAGGACGTTCGGTACAAAGGGTATGACATTCCATGTGGATGGAAAGTGCTGC CGGTGATAGCGGCCGTGCACTTGGACGGTACCGTTTTCGATGACCCTCAATCCTTCAATCCATGGCGGTGGCTCCAGACGATCAACGGTCGAGGATCTTC TCCGACGACGTCTCCGGCACCGAACAGCAGCAACACCTTCATGCCGTTCGGAGGAGGGCCGCGGCTGTGTGCAGGGTCAGAGTTGGCAAAGCTAGAAATG GCGGTTTTCATACACCATTTGGTACTAAACTACGAGTGGGAGTTGGCGGAAGATGATCAAGCCTTTGCATTCCCATACCTTGACTTCCCTAAGGGTTTAC CTATTAGAATTAAGCGTCGAAACATCACATAG
AA sequence Show only first row Show all	>Lus10024016 pacid=23141579 polypeptide=Lus10024016 locus=Lus10024016.g ID=Lus10024016.BGIv1.0 annot-version=v1.0 MSESELLLTGLFLLPSLFTLLLILILKTKNNNHHHRFNLPPGSSGWPFIGETIGYLRPYSATSIGHFMEHHVSRYGKIYRSTLFGEPTIVSADAGLNRFI LQNEGRLFECSYPRSIGGILGKWSMLVLVGDMHRNMRIISLNFLSHARIRTHLLKEVERHTLLVLSSWNHNSTFSAQDEAKKFTFNLMAKHIMSLDPGKP ETEQLKSEYITFMKGVVSPPLNFPGTAYRRALKSRSTILKFIERKMEERKKRSNEVGEDDDLLGWEEHSGIAKAKKHAGETELNWDDYKKMEFTQCVISE TLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVIAAVHLDGTVFDDPQSFNPWRWLQTINGRGSSPTTSPAPNSSNTFMPFGGGPRLCAGSELAKLEM AVFIHHLVLNYEWELAEDDQAFAFPYLDFPKGLPIRIKRRNIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10024016 [exp]	0	1
AT1G47670			Transmembrane amino acid trans...		Lus10032751 [exp]	1.4	0.9036
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	4.9	0.8993
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041737 [exp]	5.2	0.8160
AT1G47670			Transmembrane amino acid trans...		Lus10011668 [exp]	6.5	0.8499
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	8.5	0.8846
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10022818 [exp]	10.0	0.8381
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	13.4	0.8424
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10007671 [exp]	14.3	0.8774
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	15.9	0.8334
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	16.9	0.8346

Compare expression of checked genes

Lus10024016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.