Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024018 pacid=23141573 polypeptide=Lus10024018 locus=Lus10024018.g ID=Lus10024018.BGIv1.0 annot-version=v1.0 ATGGCTGAGGAGGCAAAGATGATTGCTAGTATCCATTGTCCTTTGATCGAATATGGAGGTGTTTCTTTGAGTACGGAACAATTCCAGGAGAAGAAGTTGG TGCAGTTCCTGCTGATACAATATATGGTACTAGAAGTAGGTTGTCATGCACTGCCAGATGTTAGGATTTCTCATATCATTTCATTTGTCATCAAGAACCT GTTTTTGTGGCAAACAAGAAGGAAATTGTTTGATGATGAGATGAAGTACTGTGTTCCTCAGATGATGTCCCTCGTCCACAACCGTGCACTCATTGATGGT GTGATTGCTGTAATCCCCCTAGCTGGAAGAGAGGCAGCCAGCCATTGGATGAGTGTTTGA
AA sequence Show only first row Show all	>Lus10024018 pacid=23141573 polypeptide=Lus10024018 locus=Lus10024018.g ID=Lus10024018.BGIv1.0 annot-version=v1.0 MAEEAKMIASIHCPLIEYGGVSLSTEQFQEKKLVQFLLIQYMVLEVGCHALPDVRISHIISFVIKNLFLWQTRRKLFDDEMKYCVPQMMSLVHNRALIDG VIAVIPLAGREAASHWMSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024018 [exp]	0	1
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10016500 [exp]	2.2	0.6343
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	8.0	0.6363
AT5G07240		IQD24	IQ-domain 24 (.1)		Lus10005760 [exp]	10.2	0.6398
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10007924 [exp]	11.0	0.6146
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	11.7	0.6452
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036170 [exp]	12.1	0.6677
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Lus10031083 [exp]	20.1	0.5651
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10038376 [exp]	21.9	0.6017
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10015848 [exp]	37.3	0.5959
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	38.5	0.5917

Compare expression of checked genes

Lus10024018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.