Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66750 1026 / 0 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT5G19310 402 / 6e-125 Homeotic gene regulator (.1) AT2G13370 348 / 2e-102 CHR5 chromatin remodeling 5 (.1) AT4G31900 335 / 1e-99 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G25170 333 / 5e-98 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G44980 312 / 2e-93 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT5G44800 298 / 3e-85 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G46020 290 / 2e-82 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT5G18620 271 / 2e-77 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 270 / 5e-77 CHR11 chromatin-remodeling protein 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041735 [exp] 1447 / 0 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10022423 [exp] 363 / 2e-107 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 344 / 3e-101 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10005339 [exp] 338 / 2e-99 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 337 / 5e-99 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10036371 [exp] 304 / 3e-87 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10038363 [exp] 288 / 8e-82 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10039140 [exp] 276 / 9e-81 AT2G02090 1107 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10033967 [exp] 267 / 6e-75 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026700 [exp] 1138 / 0 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.019G129900 [exp] 1132 / 0 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.010G091200 [exp] 374 / 2e-114 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 373 / 1e-113 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.001G253400 [exp] 373 / 5e-111 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.008G195900 [exp] 373 / 1e-110 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G019150 [exp] 372 / 3e-110 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.009G047800 [exp] 360 / 1e-106 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.006G262200 [exp] 340 / 5e-100 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 337 / 8e-99 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024019 pacid=23141463 polypeptide=Lus10024019 locus=Lus10024019.g ID=Lus10024019.BGIv1.0 annot-version=v1.0 ATGCCCACTTCTCGGCAATCTGTCGCAGGCCAAGCTTCCTCTAATGGACCCGATGCCCTCATTGAGGGAGAGATAAAGATTGAAGCTCCTGCCGACTCTC CGACCTCGGTTCTCGAAGATGAGGATAATGTCCAGAACGAAATGGATGTAAAGTCCGAGGAAGATCATCTGCTAGCGGCAAGTATTGGAGATGGTTCGCC CATATCACGGGCCATGGCAGAGGAGGAAGAAAAATTGATGAACAGCAGGGAAAGAGAAGAAGCAAAAGGAAATGTGAAGGAAGAGGCACCTCACTTGAAT GATTCTCAGTTTAACAAGTTGGATGAGCTCCTTACTCAGACACAGCTCTACTCAGAGTTTTTATTAGAGAAGATGGATGACATCACAAATAATGGAGAAG AGCAAGACAATGAAACCGTCGGGAACAAGAAAGGCTGTGGTTCAAAGAGAAAAGCTGGAGCAGGATGCAATACGAGAAGAGCCAAGAGGGCAGTTGCAGC TATGATTACGAGATCAAAAGAAGTAGAAAGTGCCGATGATGCAACTCTGAGTGTTGAGGATAAGGTTGAGAAAGAGCAGAGGGAGCTGGTGCCTTTGTTG ACGGGTGGCAAGCTGAAAGCTTATCAACTAAAAGGTGTGAAGTGGTTAATATCTTTGTGGCAGAATGGGCTCAATGGGATTCTTGCTGATCAGATGGGGC TTGGGAAAACCATTCAAACAATTGGTTTCCTTGCACATCTTAAAGGGAAGGGTTTGGATGGTCCCTATTTAATAATAGCACCACTTTCTACTCTGGCAAA TTGGATGAATGAGATTTCAAGGTTCGCACCATCTCTGAATGCAGTCATCTACCATGGTGACAAGAAGCAGAGAGATGAGATAAGGAGGAAACACATGCCT AAATCTATAGGCTCGAAATTTCCCGTTATTATTACGTCATATGAAGTTGCATTATTTGATGCAAAAAGGTTTCTGAAGCATTACACTTGGAAGTATGTTG TGGTTGACGAGGGTCACAGATTGAAGAATGCCAAGTGTAAATTGGTGCAACATCTGAAGTATCTTCCGATGGAGAATAAGCTTCTATTAACTGGAACACC TCTGCAGAACAACCTTGCTGAGCTTTGGTCCCTGCTAAACTTCATTTTACCTGATATTTTTCAGTCTCATGAAGAATTTGAGTCATGGTTTGATCTGTCA GGAAAGTGCAACAGCGAGGCCACAGTAGCAGAACTTGAAGAAAAGAGGAGATCTCAGGTTGTGGCAAAACTTCATGGCATCCTCCGCCCATTTCTCCTCA GAAGATTGAAGGCTGATGTTGAGCTCCTGCTTCCCAGGAAGAAAGAGATAATATTATATGCAACCTTAACTGATTATCAGAGGAACTTCCAGGAACATTT GATTAATAGGACATTGGAAAAACATTTGCTAGACAAGGTGGATATAGGTACTGTGAAGAAGCCCTTAATTATCTGCTGCCTCGTTGATAATTGCATACAC CAGGTTATAAGATGGGACCTGGAATATAGCAGTCTGCCTGTATGCTTGCACTTTAAGGGGAAAAATGAAGCTGCTAAATTTCTGCATAATGTGTCAATTT CTGAAATGGATACGGTGCATGGACGTGGCATGAAATTGAAGCTAAACAATTTGATGATTCAGCTTCGGAAGAACTGCAACCACCCAGATCTTTTGGAGTC TGCCTTCGATGGCTCATATTTGTACCCACCTGTTGAGCAGATTGTTGAGCAATGTGGCAAGTTCCAGTTGTTGGAAAGATTGCTGAAGCGGTTGTTTGAA GATAAGCATAAAGTTCTGATATTCACCCAGTGGACTAAGATTCTGAATATTATGGACTACTATTTTAGTGAAAAAGGATTTGAGGTGTGTAGAATTGATG GCAGTGTCAAACTGGAAGACAGAAGAAGACAGATTGCGGAATTCAATGACCTGAACAGCACTTGTAGGATATTTCTTCTTAGCACCAGAGCTGGTGGATT AGGTATCAACCTCACTGCAGCGGATACATGCATACTCTATGATAGTGACTGGAATCCACAAGTGGATTTGCAGGCAATGGACCGGTGTCATAGAATTGGA CAGACCAAACCTGTACATGTTTACAGGCTTGCAACAGCTCAATCTGTCGAGGGTCGCTTGCTGAAAAGGGCTTTTAGTAAGCTGAAGTTGGAGCATGTTG TAATCGGGAAGGGACAGTTTCATCAAGAACGGACCAAGGCTAACCCTTTAGCTGACATGGAGGAAGAGGATATTCTGGCACTTCTACGTGATGAGGAAAG CGCTGAAGACAAACTGATACAAACAGACGTCAGTGATGAAGATTTGGAGAGAATTATGAATAGAAGTGATCTTATTGACAGTCCCGAGGGCAAGATAGGG AATGGCGCAGCTGCTGCTGCTGCATTGCCTCTCAAGGGTCCTGGATGGGAGGTGGTTATTCCGACGGCTACCGGAGGTGTGCTCTCCACCCTCAATAGTT AA
AA sequence Show only first row Show all	>Lus10024019 pacid=23141463 polypeptide=Lus10024019 locus=Lus10024019.g ID=Lus10024019.BGIv1.0 annot-version=v1.0 MPTSRQSVAGQASSNGPDALIEGEIKIEAPADSPTSVLEDEDNVQNEMDVKSEEDHLLAASIGDGSPISRAMAEEEEKLMNSREREEAKGNVKEEAPHLN DSQFNKLDELLTQTQLYSEFLLEKMDDITNNGEEQDNETVGNKKGCGSKRKAGAGCNTRRAKRAVAAMITRSKEVESADDATLSVEDKVEKEQRELVPLL TGGKLKAYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLANWMNEISRFAPSLNAVIYHGDKKQRDEIRRKHMP KSIGSKFPVIITSYEVALFDAKRFLKHYTWKYVVVDEGHRLKNAKCKLVQHLKYLPMENKLLLTGTPLQNNLAELWSLLNFILPDIFQSHEEFESWFDLS GKCNSEATVAELEEKRRSQVVAKLHGILRPFLLRRLKADVELLLPRKKEIILYATLTDYQRNFQEHLINRTLEKHLLDKVDIGTVKKPLIICCLVDNCIH QVIRWDLEYSSLPVCLHFKGKNEAAKFLHNVSISEMDTVHGRGMKLKLNNLMIQLRKNCNHPDLLESAFDGSYLYPPVEQIVEQCGKFQLLERLLKRLFE DKHKVLIFTQWTKILNIMDYYFSEKGFEVCRIDGSVKLEDRRRQIAEFNDLNSTCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIG QTKPVHVYRLATAQSVEGRLLKRAFSKLKLEHVVIGKGQFHQERTKANPLADMEEEDILALLRDEESAEDKLIQTDVSDEDLERIMNRSDLIDSPEGKIG NGAAAAAALPLKGPGWEVVIPTATGGVLSTLNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	0	1
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	2.8	0.9624
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	4.2	0.9612
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	4.6	0.9610
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	5.0	0.9520
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10010323 [exp]	5.1	0.9297
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	6.7	0.9395
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10012910 [exp]	7.5	0.9472
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	7.7	0.9510
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10017367 [exp]	8.7	0.9217
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	10.9	0.9477

Compare expression of checked genes

Lus10024019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.