Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18470 561 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 514 / 1e-176 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24550 505 / 4e-173 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G49270 492 / 2e-167 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G18810 484 / 3e-164 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G52290 451 / 7e-154 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 439 / 4e-149 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G23540 434 / 2e-144 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 431 / 1e-143 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 409 / 2e-135 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041734 [exp] 872 / 0 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 642 / 0 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014319 [exp] 518 / 0 AT3G24550 456 / 3e-156 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 523 / 4e-180 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 518 / 1e-177 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 509 / 6e-175 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026027 [exp] 484 / 1e-166 AT2G18470 420 / 5e-141 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10026335 [exp] 480 / 4e-166 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 482 / 4e-164 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124400 [exp] 566 / 0 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 563 / 0 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 537 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 503 / 5e-172 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 497 / 7e-170 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 465 / 2e-158 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 461 / 4e-157 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G189700 [exp] 439 / 3e-146 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 432 / 1e-143 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G105200 [exp] 424 / 2e-140 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10024020 pacid=23141545 polypeptide=Lus10024020 locus=Lus10024020.g ID=Lus10024020.BGIv1.0 annot-version=v1.0 ATGTCGGCCACATCCAATGAGCAAACCGGTTCGGCAACCACAAACTCAAAACCAGATAACGGTTCGACTCGGATTCCCGACACTAGGACGCCGCCAGGTT TGCGGACGACGACCAAGTTCATCGACGAAGTCAAGGCGCTGACGCCGCCGGGGGCTGAAATGTGGAAGAGCGCAACCAGCGGCATTTCTCAAGAACAGAT TAAGCTGATCATCGGGATATCCGTCGGGGTGGGGCTTTTTTTTATCATCTTCATCATCATTTGCATCTGCTGCTGCTGCTGCTGTAGAAAGAAGAAGAAA CACAAGGATAATAAGAATCAAAATCAGATGCATTACTACGGCGAGTATCCGATGGGCCCGCCGCCGCCTCCTCCGGAGCAATATTACATGAGCAGCGGCC AATTCCCCTCCGGGCCTCCGCTGCAGCAGAAATGGCAGCAATCTCCCGGTCATCCTCCTCCGCCGCCGATGGGAATGAATTACAGCGGCGGAAGTGGGTG GCAGAGTGGGCCGCCGATGTCGAGCGGGGACATGGCGAGCGAGAATTACTCCAACCTCCAGCCTCCGCCTCCGCCGCCGACGATCTCGCTAGGATTCAAT AAGAGCACGTTTACGTACGAGGAGCTGATGGCGGCCACCGGAGGGTTTACTCAGTCGAATCTGTTGGGACAAGGAGGGTTCGGGTATGTGCATAAGGGGG TTTTGCCCAACGGGAAGGAAGTAGCGGTGAAAAGCTTGAAATCGGGTAGCGGGCAGGGGGAGAGGGAATTCATGGCGGAGGTTGAGATTATTAGCAGAGT TCATCATCGGCATCTGGTGTCGCTGGTTGGGTACTCTGTTACTAATCAGCAGAGGCTTTTGGTGTATGAGTTTCTTCCCAATGACACCCTCGAACATCAT CTCCATGGGAGGGGTCTTCCTATTTTGGATTTCCCTACAAGGCTCAGAATAGCATTGGGTTCTGCCAAGGGACTTGCTTACCTCCATGAAGATTGTCACC CAAAGATCATTCATCGTGACATCAAGTCGTCCAACATTCTCTTGGATCTGAACTTCGATGCTAAGGTGGCTGATTTTGGGTTGGCTAAGCTATCTACTGA CAATCACACTCATGTTTCCACGCGTGTAATGGGCACATTCGGGTATCTGGCTCCAGAATATGCATCCAGCGGCAAGCTGACGGAGAAATCTGATGTTTTT TCATTTGGGGTGATGCTCTTGGAACTCATTGCTGGAAAGAGACCCGTTGATCCTACGAATGTCATGGAAGATAGCTTGGTCGATTGGGCTCGACCTCTCT TGACTCGAGCACTAGACGAAGGGAACTTCCACGAGTTGGTCGACCTCCGACTCGAAGGAAACTTCAATCCTAACGAAATGCAGCGGATGATCGCTTGCGC TGCTGCTAGCATCCGCCATTCTGCTAAGAAGCGCCCCAAGATGAGCCAGATAGTACACACGCTAGAAGGAGATGCATCACTAGAGCAGTTGAATGAGGGG GTTAGGCCTGGTCAAAGTTCTGTCTTTGGGGTAGCTGGCGGGAGCGGAGGAGAGTACGACATGGGTGCTTACAACGCGGACATGGCAAGGTTCAGGCAAG TGGCATTGTCGAGCCAAGAATTCGATAGCAGCGAACATGGAACCTCGTCGACAACGACTAGCGATTCCCGGGACATTGCACCAGCAGCTCTTCGCAAGTA TAACCTGTGA
AA sequence Show only first row Show all	>Lus10024020 pacid=23141545 polypeptide=Lus10024020 locus=Lus10024020.g ID=Lus10024020.BGIv1.0 annot-version=v1.0 MSATSNEQTGSATTNSKPDNGSTRIPDTRTPPGLRTTTKFIDEVKALTPPGAEMWKSATSGISQEQIKLIIGISVGVGLFFIIFIIICICCCCCCRKKKK HKDNKNQNQMHYYGEYPMGPPPPPPEQYYMSSGQFPSGPPLQQKWQQSPGHPPPPPMGMNYSGGSGWQSGPPMSSGDMASENYSNLQPPPPPPTISLGFN KSTFTYEELMAATGGFTQSNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFMAEVEIISRVHHRHLVSLVGYSVTNQQRLLVYEFLPNDTLEHH LHGRGLPILDFPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSSNILLDLNFDAKVADFGLAKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVF SFGVMLLELIAGKRPVDPTNVMEDSLVDWARPLLTRALDEGNFHELVDLRLEGNFNPNEMQRMIACAAASIRHSAKKRPKMSQIVHTLEGDASLEQLNEG VRPGQSSVFGVAGGSGGEYDMGAYNADMARFRQVALSSQEFDSSEHGTSSTTTSDSRDIAPAALRKYNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10024020 [exp]	0	1
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	8.2	0.7892
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	12.0	0.8026
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	13.3	0.8058
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10042907 [exp]	21.0	0.7856
					Lus10020461 [exp]	21.6	0.7900
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	25.7	0.7378
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	29.4	0.7251
					Lus10012132 [exp]	29.6	0.7755
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	35.9	0.7547
AT5G41720			unknown protein		Lus10006473 [exp]	39.3	0.7233

Compare expression of checked genes

Lus10024020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.