Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 72 / 2e-13 F-box family protein (.1) AT5G49610 67 / 8e-12 F-box family protein (.1) AT1G47300 52 / 4e-07 F-box family protein (.1) AT4G09190 46 / 3e-05 F-box and associated interaction domains-containing protein (.1) AT5G03970 46 / 3e-05 F-box associated ubiquitination effector family protein (.1.2) AT1G47340 43 / 0.0003 F-box and associated interaction domains-containing protein (.1) AT1G27340 42 / 0.0006 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G18160 42 / 0.0007 F-box and associated interaction domains-containing protein (.1) AT3G26010 42 / 0.0008 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G22430 42 / 0.001 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041733 [exp] 753 / 0 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10014320 [exp] 164 / 3e-46 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10015048 [exp] 62 / 3e-10 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10017086 [exp] 58 / 6e-09 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 57 / 1e-08 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10002769 [exp] 49 / 3e-06 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10037030 [exp] 45 / 8e-05 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 45 / 8e-05 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013986 [exp] 45 / 0.0001 ND 55 / 7e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124500 [exp] 287 / 1e-92 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.007G027200 [exp] 282 / 8e-91 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.007G027300 [exp] 182 / 1e-52 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.010G224400 [exp] 74 / 7e-14 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.010G254000 [exp] 66 / 1e-11 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.007G037500 [exp] 62 / 3e-10 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.015G028500 [exp] 59 / 2e-09 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.008G038000 [exp] 57 / 8e-09 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G149000 [exp] 57 / 1e-08 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.018G132800 [exp] 57 / 2e-08 AT5G07610 158 / 1e-43 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024021 pacid=23141473 polypeptide=Lus10024021 locus=Lus10024021.g ID=Lus10024021.BGIv1.0 annot-version=v1.0 ATGGCTACTTGTGATAAGATGGAGAAAATCCAGATGGAAGATGTGGATGGCGGCTTTGTTCTTGTTGGTATCGAAGAATCTGATGAAGAACGAGCTCATT TAATTTCTAACGACGAATCTGAGGATGTAAGGTTCTCACCGAGGAAACGTTTCGTAACTAACATTCAAGCGAAGCGAGAAGACATCAAAGAACCCTCAGA ACAAGAATCTGATGAAGAAGAACAAGCGCATCTCTCTTCTGGCGACGAGTCTGCATACTATGATGGAGTAAGGTTTTCACCGAGGAAACGTTTCGCAACT AACAATCAAGCGAAGCAAGAAGACATCAAAGAAGTGATCAAACGGCAGGTTCTCACTTTCCTTCCTGCAAAGTCAGTTTGCAGGTTCAAAGCCGTTTCGA AAAACTGGGACAGTTGGATCTCCTGTCCTTTATTCGCCCACCAGCAATCCTTATGTTTCAACTCCATCTCCGGCCTCTTCTCCCAACTCCCTGGCGAAAC CCCATCCTTCGTATCCCTCCATCGAGACTCTTGTGGTGTACCGAACCCTTCCCTCGGATTCTTACCCGAACCGGTCGAGGTTCGAGCCACTAATGGCGGT TTACTCTGCTGCCGGAGCCATGTAGGTTCCTACTACATATGCAACCCGGTGACAAAGCTCTGGACGAAGCTTCCCGAGCCAAGTTTGTATCATGGACCGG AGACAGTTGTAGGACTCACCTTCGAGCCTTCCAAATTCAACTTCACTGAGCATTATCAGCTTGTTTGCGCTGTCGTTAGCTCGATTCTCGACGATTACAG TCCTCCAGTCGTCTCGTTCGAGGTATTCTCCTCGAGATCAGCTGAATGGAGGGTGTGTGATAGTATGTCTTGCTCTGCTTTGGGTGGATTCTTGGGGGAT GGATTGTACTTGGATGGATTTTTGTACTGGGAGACCGGAGTTGGTACCGTGCTGGCGTTTGATGTGAAGAATGAAGACTTTGGGATCCTGACTCTGCCAT ATAACAGTGGACCTGACGGAACTTTGTCGGTTATGAACAATGAACTATGCTATCTGGTGCCGGTCTTTGATGATGAGGGGTTGGAGTGGACGGTGAAAGT TTATGGGAATCTGGATATGAGGCTTAAGCGTGTGATCCGGTTGACAGGAAGTGCATACAGCATGTCGGGGAAGTGTCGAGTTCTGGCTTTCGCTAACGAG AAGTTGCTGATTGCGATATTCGGAGGGAGGAGCATTGTGGCTTATGATGTTGAAGCTGAGGAGGAGAAGTGGCTTGGGAGTGCAAGCGTTGATGGGTTCG GAAAGTATGTGCCGTATGTGAATAACCTGGTGAATGTTCCTGCTGAACAGGAGGGTGGATTTGGGGGTCTTTTTGACACTACAGCTATGGATTTCATGAA TTAG
AA sequence Show only first row Show all	>Lus10024021 pacid=23141473 polypeptide=Lus10024021 locus=Lus10024021.g ID=Lus10024021.BGIv1.0 annot-version=v1.0 MATCDKMEKIQMEDVDGGFVLVGIEESDEERAHLISNDESEDVRFSPRKRFVTNIQAKREDIKEPSEQESDEEEQAHLSSGDESAYYDGVRFSPRKRFAT NNQAKQEDIKEVIKRQVLTFLPAKSVCRFKAVSKNWDSWISCPLFAHQQSLCFNSISGLFSQLPGETPSFVSLHRDSCGVPNPSLGFLPEPVEVRATNGG LLCCRSHVGSYYICNPVTKLWTKLPEPSLYHGPETVVGLTFEPSKFNFTEHYQLVCAVVSSILDDYSPPVVSFEVFSSRSAEWRVCDSMSCSALGGFLGD GLYLDGFLYWETGVGTVLAFDVKNEDFGILTLPYNSGPDGTLSVMNNELCYLVPVFDDEGLEWTVKVYGNLDMRLKRVIRLTGSAYSMSGKCRVLAFANE KLLIAIFGGRSIVAYDVEAEEEKWLGSASVDGFGKYVPYVNNLVNVPAEQEGGFGGLFDTTAMDFMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	0	1
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	3.0	0.8366
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	3.9	0.8279
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10033594 [exp]	6.0	0.8179
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	6.2	0.8606
AT3G61370			Protein of unknown function (D...		Lus10001364 [exp]	6.2	0.7946
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	9.1	0.8445
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	11.2	0.7837
AT4G36500			unknown protein		Lus10025997 [exp]	12.4	0.7830
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	12.7	0.7825
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10034074 [exp]	13.6	0.7656

Compare expression of checked genes

Lus10024021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.