Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36650 566 / 0 ATPBRP plant-specific TFIIB-related protein (.1.2) AT2G41630 99 / 9e-23 TFIIB transcription factor IIB (.1) AT3G10330 96 / 1e-21 Cyclin-like family protein (.1) AT4G10680 53 / 7e-08 transcription factor IIB (TFIIB) family protein (.1) AT2G45100 42 / 0.001 Cyclin/Brf1-like TBP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041732 [exp] 875 / 0 AT4G36650 605 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10035440 [exp] 88 / 1e-18 AT3G10330 603 / 0.0 Cyclin-like family protein (.1) Lus10016260 [exp] 87 / 2e-18 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Lus10031055 [exp] 67 / 5e-12 AT3G10330 355 / 7e-124 Cyclin-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027600 [exp] 679 / 0 AT4G36650 575 / 0.0 plant-specific TFIIB-related protein (.1.2) Potri.016G057100 [exp] 98 / 2e-22 AT3G10330 611 / 0.0 Cyclin-like family protein (.1) Potri.006G048400 [exp] 96 / 9e-22 AT3G10330 605 / 0.0 Cyclin-like family protein (.1) Potri.017G093100 [exp] 70 / 7e-13 AT3G10330 333 / 1e-114 Cyclin-like family protein (.1) Potri.015G067500 [exp] 67 / 5e-12 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00382 [flax] [poplar] TFIIB Transcription factor TFIIB repeat
Representative CDS sequence Show only first row Show all	>Lus10024022 pacid=23141605 polypeptide=Lus10024022 locus=Lus10024022.g ID=Lus10024022.BGIv1.0 annot-version=v1.0 ATGGCATGCCATTTTGACTCCGTTCTTCCTCAGTACCGCTCAGCTCCCGCCTGGAAAGAAATGAAGTGCCCCTACTGCTCATCTCCGCAGGGCCGGTGTT CGACGACGTCCACCGGCCGATCAATCACCGAGTGCACTTCCTGTGGCCGCGTTGTCGAGGAGCGTCAATTTCAAACTCACCATCTCTTCCACATTCGAGC CCAAGACAATCCACTCTGCCTAGTCACCTCCGACCTTCCCTCCGTCCCCCACGACCACCTCCACCGCCACCACAAAACAGCCGACCAAGCGCCCGAAGAT GAAAAAGAAGAAGAAGAAGAAGATCCTTTCGAACCAACAGGATTCATCACCGCCTTCTCTACATGGTCTCTCGAGCAAACCCCGCTCTCTGTCCGCTCTT CTCTCTCATTCTCCGGCCACCTGGCGGAGCTCGAGCGCATCCTCGAATTGACCACGGGATCCTCGTCCGCGGCCTCGGCGCCAAACAATTCCAACTCGTC GACGGTAGTGATTGATAATTTGAGAGCCTATATGCAGATAATCGATGTAGCTTCCATTCTAGGGTTGGATTCAGATATATCGGATCACGCTTTCCAGCTT TTTAGGGATTGTTGCTCCGCTACTTGTTTGAGAAACCGCAGCGTAGAAGCGCTTGCCACCGCCGCCCTCGTTCAAGCCATTCGAGAGGCTCAGGAACCTA GAACTCTCCAGGAAATCTCGATTGCTGCGAATGTGCCACAGAAGGAGATTGGGAAGTACATCAAGATTCTAGGAGAAGCTCTGCAGCTTAGCCAACCCAT TAACAGCAACTCTATCTCTGTTCATATGCCCAGATTCTGCACCCTTCTCCAACTCAACAAATCTGCTCAGGAATTGGCCACGCACATAGGGGAAGTGGTC ATAAACAAGTGTTTCTGCACGCGGAGAAACCCCATCAGCATATCAGCTGCTGCCATATATCTGGCATGCCAATTAGAAGACAAGCGAAAGACACAGGCAG AGATTTGTAAAGTTACAGGGCTTACTGAGGTTACACTGAGGAAAGTATACAAGGAACTTTTGGAGAACTGGGATGATCTGCTCCCTTCAAATTATACTCC AGCTGTCCCTCCAGAGAAAGCCTTTCCCACCACTATATTTACTTCAGGACGTTCAGTGGGGGCTAGAGCTGAGCCAATCGACCTACTGTCTTCAGACAAG CCCAATAATGAGGCGATGTCCCGTGGTAAAGAAGCGAATGAAGGCAATGGGAGTTCGCAGGGTGTCCCTAGCCCTGCATGGCATACTTTCAGGCAGCCAT GGGTTCAGTTTACTACAACACCAGGAGATACCAGTGCTTCACAGTCTAGTCGTTTGGAGCTGGATGAAAAAGATAAGCACAAGATTGACACTTCAGCTGG CGTTAGGGGAAACCAATTTCCAACTACGCCTTCTTCGTCGAGTGTGAGTACGATCACTTGGCCATTTCAGTCAACTTCTTCTACAGTTGGTTCTCCAATC GTTCAGCCCCCGCCTAAGCTGGCGCCGGGATTTGCAGAACTTAAAGCTGTTGGAAACCAGAAGGGAGGTAAATCTGCAACCGGTGGAGATGGCAAGTGGC GTATTTGA
AA sequence Show only first row Show all	>Lus10024022 pacid=23141605 polypeptide=Lus10024022 locus=Lus10024022.g ID=Lus10024022.BGIv1.0 annot-version=v1.0 MACHFDSVLPQYRSAPAWKEMKCPYCSSPQGRCSTTSTGRSITECTSCGRVVEERQFQTHHLFHIRAQDNPLCLVTSDLPSVPHDHLHRHHKTADQAPED EKEEEEEDPFEPTGFITAFSTWSLEQTPLSVRSSLSFSGHLAELERILELTTGSSSAASAPNNSNSSTVVIDNLRAYMQIIDVASILGLDSDISDHAFQL FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVV INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTIFTSGRSVGARAEPIDLLSSDK PNNEAMSRGKEANEGNGSSQGVPSPAWHTFRQPWVQFTTTPGDTSASQSSRLELDEKDKHKIDTSAGVRGNQFPTTPSSSSVSTITWPFQSTSSTVGSPI VQPPPKLAPGFAELKAVGNQKGGKSATGGDGKWRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	0	1
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	1.4	0.8613
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	1.7	0.8660
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	4.0	0.8101
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	4.6	0.8405
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	6.2	0.7977
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10021934 [exp]	6.9	0.8363
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	10.6	0.7960
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	10.6	0.8181
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	11.6	0.8267
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	12.0	0.8101

Compare expression of checked genes

Lus10024022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.