Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25620 479 / 1e-168 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT1G04610 466 / 1e-163 YUC3 YUCCA 3 (.1) AT5G11320 461 / 4e-162 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G13260 460 / 1e-161 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT5G43890 452 / 4e-158 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT4G28720 451 / 8e-158 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G04180 450 / 2e-157 YUC9 YUCCA 9 (.1) AT4G32540 440 / 1e-153 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT2G33230 440 / 2e-153 YUC7 YUCCA 7 (.1) AT1G21430 322 / 2e-107 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041729 [exp] 795 / 0 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10023637 [exp] 485 / 1e-171 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 476 / 7e-168 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 473 / 2e-166 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 466 / 3e-164 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10022851 [exp] 462 / 3e-162 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10035244 [exp] 451 / 1e-157 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 450 / 4e-157 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10011274 [exp] 437 / 3e-152 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028200 [exp] 600 / 0 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 491 / 1e-173 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 488 / 3e-172 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 474 / 3e-167 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 467 / 4e-164 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 460 / 4e-161 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.018G033200 [exp] 452 / 2e-158 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 446 / 3e-154 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.005G186100 [exp] 343 / 7e-116 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 332 / 2e-111 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10024023 pacid=23141467 polypeptide=Lus10024023 locus=Lus10024023.g ID=Lus10024023.BGIv1.0 annot-version=v1.0 ATGCGCCAAAAGCCCAAAGAAACTATACAGCAGCCAATTGTGTGGGTTCCTGGACCTGTGATCATAGGTGCAGGACCTTCAGGCCTAGCTGCAGCAGCAT GCCTCAAAACCAAAGGAATCCCATTTCTAATCCTTGAGAAAGGAACCTCAATTGGGTCCTTGTGGAAGTTTGGAACTTATGACCGTTTGCAACTCCACCT TCCTAAGAAGTTCTGTGAACTACCTTACTTGCCATTCTCACCTGATTTCCCTGCATACCCAACAAAGCAACAGTTCATATCTTACATGGAAGGCTACGCC AAGGACTTCACCATCAAACCATTGTTTCATCAAGAAGTTCGAGTCGTCCAGTATGATACCACCATGGGAATCTGGCAGGTTCAAGCCAGTGAGTACCAGT TCATATGCCAGTGGGTGATTGTCGCCACTGGGGAGAATGCTGAGCCGGTTCTTCCTGATATACAAGGGATGAAATGTTTCAAGGGAAGAACTTTACACAC CAGCAGCTACAAAGATGGAGCCGAGTTCAAAGGCAAGAAAGTTCTGGTGGTGGGTTGTGGGAATTCTGGCATGGAAGTTAGCTTGGATCTTTTTAACAAT GGTGCTGATGTTTCTGTCTCAATTAGAAATAAGCTTCATATATTGCCTAGAGAGGTTCTAGGAATCTCAACTTTTGCTCTATCAATGTTGCTCCTCAAGT GGTTCCCTGTGAAGCTAGTTGACAAGTTTCTTATCCTTGTCTCAAGGCTTGTTCTTGGGGACACTGGTAGAGCTGGCATCACAAGACCTGAAATTGGTCC CTTGGAACTTAAGAACTCAACTGGGAAAACTCCTGTCCTGGATGTTGGTGCGTTTGCCAAAATCAAATCTAGCCAAATCAAGATTGCGGGCGGGCTCCGA AGATTCACTAGGAATGGAGTCGAGTTTGGGGATGGAACAGTGAAGGAATTTGATGCAGTTATTCTAGCAACAGGGTACAGAAGCAACGTAACTTCCTGGC TCAAGGAGGAGCACTTCTTCAATGAAAAGGATGGGTACCCAAGAATGGCATTCCCAAACAATTGGAAAGGAAACAATGGAGTTTATAGCATTGGATTCAA CAGGAGAGGGTTGCTGGGAGCTTCCATGGATGCAGAAAAAGTTGCAGAAGATATTGCAAGACAGTGGAACTCTGAGACAAGGCATTTGAGGGTCCAGCCA TAG
AA sequence Show only first row Show all	>Lus10024023 pacid=23141467 polypeptide=Lus10024023 locus=Lus10024023.g ID=Lus10024023.BGIv1.0 annot-version=v1.0 MRQKPKETIQQPIVWVPGPVIIGAGPSGLAAAACLKTKGIPFLILEKGTSIGSLWKFGTYDRLQLHLPKKFCELPYLPFSPDFPAYPTKQQFISYMEGYA KDFTIKPLFHQEVRVVQYDTTMGIWQVQASEYQFICQWVIVATGENAEPVLPDIQGMKCFKGRTLHTSSYKDGAEFKGKKVLVVGCGNSGMEVSLDLFNN GADVSVSIRNKLHILPREVLGISTFALSMLLLKWFPVKLVDKFLILVSRLVLGDTGRAGITRPEIGPLELKNSTGKTPVLDVGAFAKIKSSQIKIAGGLR RFTRNGVEFGDGTVKEFDAVILATGYRSNVTSWLKEEHFFNEKDGYPRMAFPNNWKGNNGVYSIGFNRRGLLGASMDAEKVAEDIARQWNSETRHLRVQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10024023 [exp]	0	1
AT1G69630			F-box/RNI-like superfamily pro...		Lus10032432 [exp]	3.2	0.8168
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	13.9	0.8316
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10020741 [exp]	15.2	0.8220
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	20.8	0.8161
AT5G06440			unknown protein		Lus10016186 [exp]	23.2	0.8158
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10041120 [exp]	26.1	0.7530
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	26.3	0.8180
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002545 [exp]	27.7	0.8176
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	36.0	0.8108
					Lus10019410 [exp]	37.6	0.8165

Compare expression of checked genes

Lus10024023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.