Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18510 275 / 5e-92 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 104 / 2e-25 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 95 / 2e-22 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G71770 91 / 9e-21 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G22760 85 / 1e-18 PAB3 poly(A) binding protein 3 (.1) AT2G23350 82 / 7e-18 PABP4, PAB4 poly(A) binding protein 4 (.1) AT4G10110 75 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G14100 72 / 1e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 72 / 1e-14 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 70 / 9e-14 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041728 [exp] 302 / 8e-103 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010370 [exp] 94 / 8e-22 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 93 / 1e-21 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 90 / 2e-20 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 90 / 2e-20 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10007895 [exp] 78 / 9e-18 AT4G10110 153 / 9e-48 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030350 [exp] 75 / 3e-16 AT4G10110 146 / 2e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027641 [exp] 71 / 4e-14 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 71 / 4e-14 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028300 [exp] 293 / 5e-99 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G125300 [exp] 290 / 2e-98 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G304000 [exp] 94 / 5e-22 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 93 / 1e-21 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 93 / 2e-21 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 92 / 2e-21 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G062700 [exp] 90 / 2e-20 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.005G198500 [exp] 84 / 2e-18 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.019G069000 [exp] 77 / 4e-17 AT4G10110 187 / 8e-61 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G191500 [exp] 77 / 4e-16 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10024024 pacid=23141558 polypeptide=Lus10024024 locus=Lus10024024.g ID=Lus10024024.BGIv1.0 annot-version=v1.0 ATGGATGATGATGGTTTTGGTACGACGACAGTTTGGCAACCCAAGTGCAGAAGCAGAACAGACAGGGTTGAAAATGCAGAACAGGGCTGGGCAAGCGGAG TCTCTGTTGCATATGAACACTGTTCTCTTCAGCATTCCTTGGGGAGATACATTGCAGAGAGCCTTAACCGGAACGCAAGGGTTGAACAGATTCACGGAAT GACTACTCGAATCACGCCCGGCGTGGGAGCCAATTTGCTGGGCCAGCACGCCACCGAGAGGAATCAAGACGCCACCGCCTACGTCGGCAACCTCGATCCC CAGGCTTCTGAGGAGCTATTGTGGGAGTTGTTCGTTCAAGCTGGCCCCGTCGTTAATGTGTATGTACCAAAGGATAGGGTGACGAATCTGCACCAAGGTT ATGGATTCGTGGAATTCCGTAGCGAAGAAGATGCTGACTATGCAATTAAGGTTTTAAACATGATCAAGCTCTATGGGAAGCCGATACGAGTGAACAAGGC ATCACAAGATAAAAAGAGCTTGGATGTTGGGGCAAATCTGTTCATCGGAAATCTTGACCCTGATGTTGATGAAAAGCTTTTGCATGATACTTTCAGTGCA TTTGGAGTCATTGTTTCGAATCCCAAGGTCACTTATACTCCTGTAGTTTCATTTCTGATGTTTCATATACTTGTGCATTCGGAATACCAATGA
AA sequence Show only first row Show all	>Lus10024024 pacid=23141558 polypeptide=Lus10024024 locus=Lus10024024.g ID=Lus10024024.BGIv1.0 annot-version=v1.0 MDDDGFGTTTVWQPKCRSRTDRVENAEQGWASGVSVAYEHCSLQHSLGRYIAESLNRNARVEQIHGMTTRITPGVGANLLGQHATERNQDATAYVGNLDP QASEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSA FGVIVSNPKVTYTPVVSFLMFHILVHSEYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	0	1
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10002990 [exp]	1.7	0.9412
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	2.2	0.9289
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10000120 [exp]	2.4	0.9280
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	2.8	0.9406
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10031098 [exp]	3.5	0.9404
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10012920 [exp]	4.7	0.9195
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	4.9	0.9301
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	7.3	0.9098
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	8.4	0.9183
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	9.2	0.9193

Compare expression of checked genes

Lus10024024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.