Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36680 425 / 6e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 365 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 174 / 1e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 172 / 1e-49 PPR336 pentatricopeptide repeat 336 (.1) AT1G55890 171 / 4e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 168 / 3e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 152 / 7e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 137 / 2e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 126 / 6e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G14580 123 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041727 [exp] 484 / 9e-173 AT4G36680 360 / 8e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 157 / 8e-44 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 150 / 3e-41 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007619 [exp] 145 / 2e-39 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 143 / 9e-39 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 139 / 2e-37 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020055 [exp] 139 / 3e-37 AT1G61870 453 / 8e-159 pentatricopeptide repeat 336 (.1) Lus10028054 [exp] 140 / 4e-37 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 137 / 1e-36 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125400 [exp] 412 / 8e-143 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 404 / 5e-140 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 174 / 2e-50 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 166 / 3e-47 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 159 / 5e-45 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 153 / 1e-42 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 152 / 5e-42 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.004G029900 [exp] 149 / 4e-41 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G030000 [exp] 147 / 2e-40 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 146 / 5e-40 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024025 pacid=23141517 polypeptide=Lus10024025 locus=Lus10024025.g ID=Lus10024025.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCACTTCCCCTCCGCCACCTCCGCCACCTGTCCACTGCCGCAGTCTCCTCCGACGCCGCCACCGCTACAACCGCAGCTTCCTCGATTTCTA TATCCAAGGCGAAATCCAAGCTCCGATCAGAGCACGATCCGGACAAAGCCCTTGAAATCTACTCCTCCGTCTCCTCTCACTACTCCTCCCCTGTCTCCTC CCGCTACGCCCAGGATCTCGCCGTCCGCCGCCTCGCCAAAGCTCGCCGCTTCTCCGATATCGAGGCCCTCATCGAAGCCCACAAATCCGACCCCAAAATC AAGCAGGAGCCCTTCCTCTCCACTCTCATCCGATCCTATGGCCTCGCAGGGATGTTCTCCAACGCCCTCGCCACTTACCACCAGATGGACCAATTAGGTA CTCGCCGATCGTCCGTTTCTTTCAACGCCTTACTCTCCGCTTGCAATCAGTCCAGACAGTTCGATCAGGTTCCGATTCTCTTCAACGAGATCCAATCCAA ATACGGCGTCAAGCCTGATAAGATCACTTACGGTATTCTGGTCAAGTCGTATTGCGAGTCCGGGAATCCCGAGAAAGGTTTGGAGATACTGAGGGAAATG GAGCAGAAAGGTGTGGAAGTTACTGCTGTGACTTTCACCACCATTCTAGACTCGCTGTACAAGACGGGGAAAAGCGAAGATGCTGATAGGCTGTGGAATA GAATGGCGAAGAAAGGATGCGAGGTTGACGTTGCAGCTTACAACGTTAGAATCATGAACGCACACGATAAGGAGCCTGAGAAGAATGGGATGTTGGAGGA AGCTCAGAATGTGTACAAAAGCTTGGAGGAATATGGGTGCAAGCCTAATGCGACTACTTTCAGGTCTTTGATTTACTACTTGTGTAGGAACGAAAGGTTT GAGGCTGGGTACAGGGTGTTCAAGACGAGCGTGGGGCATAATAAGATCCCGGATTTTAATACGTTGAAGCATTTGGTGGATGGTTTGGTGAAGAAGAAGA GGATGAAGGATGCCAAAGGGCTAGTTCGCACCGTTAAGAAGAAGTTCCCTCCTAATGTCTTGAATGCCTGGAGGAAAGTTGAGGAAAGTCTTGGCGTTGG ATGTAGTAATGATGGAAGTGGTGAGGATGATGATAATGAGGAAGACGAGAATGAGAGTAGAGAGGCTACAGCTTAG
AA sequence Show only first row Show all	>Lus10024025 pacid=23141517 polypeptide=Lus10024025 locus=Lus10024025.g ID=Lus10024025.BGIv1.0 annot-version=v1.0 MASSLPLRHLRHLSTAAVSSDAATATTAASSISISKAKSKLRSEHDPDKALEIYSSVSSHYSSPVSSRYAQDLAVRRLAKARRFSDIEALIEAHKSDPKI KQEPFLSTLIRSYGLAGMFSNALATYHQMDQLGTRRSSVSFNALLSACNQSRQFDQVPILFNEIQSKYGVKPDKITYGILVKSYCESGNPEKGLEILREM EQKGVEVTAVTFTTILDSLYKTGKSEDADRLWNRMAKKGCEVDVAAYNVRIMNAHDKEPEKNGMLEEAQNVYKSLEEYGCKPNATTFRSLIYYLCRNERF EAGYRVFKTSVGHNKIPDFNTLKHLVDGLVKKKRMKDAKGLVRTVKKKFPPNVLNAWRKVEESLGVGCSNDGSGEDDDNEEDENESREATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	0	1
AT3G58610			ketol-acid reductoisomerase (....		Lus10022849 [exp]	1.4	0.8968
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	2.0	0.8861
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10021053 [exp]	2.8	0.8655
AT1G62730			Terpenoid synthases superfamil...		Lus10024610 [exp]	3.7	0.8467
AT1G62730			Terpenoid synthases superfamil...		Lus10032248 [exp]	5.7	0.8409
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	6.2	0.8799
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	6.3	0.8459
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10028539 [exp]	7.3	0.8116
AT1G54380			spliceosome protein-related (....		Lus10011880 [exp]	8.9	0.8309
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10042736 [exp]	10.0	0.8426

Compare expression of checked genes

Lus10024025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.