Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49530 59 / 4e-10 SIN-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037936 [exp] 231 / 3e-72 AT5G49530 344 / 3e-109 SIN-like family protein (.1) Lus10041724 [exp] 95 / 3e-22 AT5G49530 268 / 1e-81 SIN-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028600 [exp] 106 / 4e-26 AT5G49530 503 / 2e-170 SIN-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF04801 [flax] [poplar] Sin_N Sin-like protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10024027 pacid=23141492 polypeptide=Lus10024027 locus=Lus10024027.g ID=Lus10024027.BGIv1.0 annot-version=v1.0 ATGAAAGACTTTCTGAAGATATTTGCTGTCGAACGACCTTCGTTGCGGGATTGGAAGTTTAAGGAGCAAACAGACTGGTCTTTTATGAAACAGTACCCAC ATGTTGAAAAGTCCAAGAAAACTTGCGAAAGCGTGCACAAAAGTCTCGAGGAGGTGCTCGACAAAATGAAGGTTGGGCCTGGCGGTAGGAACTTAGCAAA GCCAAATGTGCCAAAGAACCCTGCAAAACCTCTAGGTTCTGATAAAACCGCAGTACCAACAGCTTCAGGAAGTACAAAGAGCACCATAACACATGAAACT CGAGAAGGTCTGAAGAAGTTCCTGCTGAAGATTATCTACACTCACAAAGTTTGCAGGGACCAGGCTATATCACAGTCTACTCTACCAAAGGCTGATCCGA GAATAGCAAAGGCAATAGCAGCGGCTGCTGATGGTCCCCCAGAGGAGCTGAAGAAGAAAACTGTCATTAAACTTCTCATAGGTAAGGGTCCTGATGCAAA GCTAAAGAGGGCTGAAATCAAAGAAGCAGTTCTCTTTGAGCTGAAAAGAGAAATGACCAACGCTGAATACAAGATATTCCGTCTCAAACTCGCCGCATTA CCAAGGACCCGCCCGTTACCAAGCCTATCAGTGGGTGGGTACGTTATGCGAACAAAATCCAGAAGTCTTCCTCGCATACCCGCCGCCTCGGCTTCGCCCT AG
AA sequence Show only first row Show all	>Lus10024027 pacid=23141492 polypeptide=Lus10024027 locus=Lus10024027.g ID=Lus10024027.BGIv1.0 annot-version=v1.0 MKDFLKIFAVERPSLRDWKFKEQTDWSFMKQYPHVEKSKKTCESVHKSLEEVLDKMKVGPGGRNLAKPNVPKNPAKPLGSDKTAVPTASGSTKSTITHET REGLKKFLLKIIYTHKVCRDQAISQSTLPKADPRIAKAIAAAADGPPEELKKKTVIKLLIGKGPDAKLKRAEIKEAVLFELKREMTNAEYKIFRLKLAAL PRTRPLPSLSVGGYVMRTKSRSLPRIPAASASP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49530			SIN-like family protein (.1)		Lus10024027 [exp]	0	1
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	2.4	0.8535
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	5.3	0.8418
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	6.9	0.8324
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	12.0	0.8115
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10040831 [exp]	12.5	0.8226
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	12.8	0.8414
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	14.7	0.8208
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	17.3	0.8182
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	18.0	0.8228
AT1G12930			ARM repeat superfamily protein...		Lus10041503 [exp]	22.0	0.8020

Compare expression of checked genes

Lus10024027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.