Plant FIBer expression Database

Lus10024028 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009734
[exp]
90 / 3e-21 AT5G16630 49 / 1e-06 DNA repair protein Rad4 family (.1.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10024028 pacid=23141551 polypeptide=Lus10024028 locus=Lus10024028.g ID=Lus10024028.BGIv1.0 annot-version=v1.0
ATGGGTGAGGGCAGCAGGGATTTAGCAACCACGACAGCGAATTCATCCACTATTAAGTTGGGTTTCCATTCTCAAGGTTTAAACATTGCCCACCAGGTGT
TTGACGAAAGTCCCCAACCAACTTTTGAACCTCCCATGTTCTCTGGTGATTCTGATCCGTCTTCATGGCTCAAAGCTTGTGTTCGGTATTTCAACGTCTC
CAAGGTCCCTGCTAATGAGATGGTAGATGAAGCCGGGTGGTTTCTTGAGAACGAGGCTTACTTCTGGTTTCTCGATTGGGAGAATGGCCGATTTCCAATA
CCGTGGTTCGAGTTTTCTCATGCCATATTGTGTCGATTTGGGTCTTTTATGCCCAACACCATCACTGCAGCTAGTCCATCGAAATTTGGCCTCCCGGTGT
TCGACAGAAATCCCCGCCCTAGTCTAACTTTTCCAACGTCCCTGACCTCGGTTGCTTCCCTTGTTGGATGCACCAATACATTTCCACAGCTGGTGGATTT
CATTTTCCCATCTCAATCGAGTACTTACTCCATGGGAAAGTATCTTTCTCATACAGAGCCATATGAGGAAGTGCATCCACAGGTAGCTTCTTCTTCATTT
GAAGATTTGAAGTTCTGTGCTTCGGTGTTTAAGGTTGGTGGTGAGTTAATATTCAGTATAGGAGGCTGTGCTATAACACTCTATGTGCATGATGTGAAGA
AATGGAAATTCTCTAGTCATTATGGAGTAGAATATAATCTTGTTTGTTGTTGTTGGGATATTCAGCTTCTGAAGGGGGGAAATTATCACTATTATGCTGT
GGTTTTGTGGGGAAGGCACCAAGATTCTGATTTTCAAACACCATGCACTAGAAGTGTATCTTCTTTCCAAGAGTCGTACAATGATGATTCCTAA
AA sequence
>Lus10024028 pacid=23141551 polypeptide=Lus10024028 locus=Lus10024028.g ID=Lus10024028.BGIv1.0 annot-version=v1.0
MGEGSRDLATTTANSSTIKLGFHSQGLNIAHQVFDESPQPTFEPPMFSGDSDPSSWLKACVRYFNVSKVPANEMVDEAGWFLENEAYFWFLDWENGRFPI
PWFEFSHAILCRFGSFMPNTITAASPSKFGLPVFDRNPRPSLTFPTSLTSVASLVGCTNTFPQLVDFIFPSQSSTYSMGKYLSHTEPYEEVHPQVASSSF
EDLKFCASVFKVGGELIFSIGGCAITLYVHDVKKWKFSSHYGVEYNLVCCCWDIQLLKGGNYHYYAVVLWGRHQDSDFQTPCTRSVSSFQESYNDDS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10024028
[exp]
0 1
AT1G19270 DA1 DA1 (.1) Lus10016298
[exp]
8.2 0.6956
AT4G39230 NmrA-like negative transcripti... Lus10026351
[exp]
11.3 0.7304
AT3G11570 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 ... Lus10021328
[exp]
20.6 0.6711
AT2G29950 ELF4-L1 ELF4-like 1 (.1) Lus10018237
[exp]
42.2 0.6690
AT4G01370 ATMPK4 MAP kinase 4 (.1) Lus10007921
[exp]
47.6 0.6642
AT4G18425 Protein of unknown function (D... Lus10013970
[exp]
48.1 0.6320
AT2G19170 SLP3 subtilisin-like serine proteas... Lus10001006
[exp]
50.2 0.6302
AT4G38650 Glycosyl hydrolase family 10 p... Lus10025054
[exp]
62.0 0.6162
AT2G26530 AR781 Protein of unknown function (D... Lus10032766
[exp]
66.5 0.6370
AT2G21660 CCR2, ATGRP7, G... GLYCINE-RICH RNA-BINDING PROTE... Lus10040454
[exp]
68.5 0.6137

Lus10024028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.