Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36730 224 / 1e-71 bZIP GBF1 G-box binding factor 1 (.1.2) AT2G35530 120 / 1e-30 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 112 / 7e-28 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT2G46270 100 / 2e-23 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 91 / 1e-20 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT2G18160 57 / 1e-09 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT1G75390 56 / 4e-09 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT5G60830 56 / 5e-09 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT3G49760 53 / 3e-08 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT3G30530 53 / 4e-08 bZIP ATBZIP42 basic leucine-zipper 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041720 [exp] 520 / 0 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10014324 [exp] 398 / 3e-139 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10026033 [exp] 363 / 9e-125 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10005146 [exp] 92 / 2e-20 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10003034 [exp] 90 / 1e-19 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10029101 [exp] 54 / 4e-08 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 52 / 1e-07 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10013059 [exp] 51 / 2e-07 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10011557 [exp] 47 / 2e-06 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029400 [exp] 325 / 3e-110 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.005G126000 [exp] 322 / 4e-109 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.001G136000 [exp] 122 / 1e-31 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.003G097600 [exp] 120 / 1e-30 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.002G167100 [exp] 105 / 2e-25 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.014G094200 [exp] 105 / 2e-25 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.015G047700 [exp] 55 / 1e-08 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.007G006900 [exp] 54 / 2e-08 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.004G111100 [exp] 53 / 5e-08 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.014G007100 [exp] 51 / 2e-07 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor CL0018 [flax] [poplar] PF07777 [flax] [poplar] MFMR G-box binding protein MFMR
Representative CDS sequence Show only first row Show all	>Lus10024030 pacid=23141608 polypeptide=Lus10024030 locus=Lus10024030.g ID=Lus10024030.BGIv1.0 annot-version=v1.0 ATGGGAACAGGTGAAAAGAGCTCACCTGCAAAGCCATCTAAAGCAGCAGCTTCTTCTACTCAGGAAATTCCATCAGCACCCGCTTATCCCGAGTGGCCAG GTTCCATGCAGGTTTATTACGGTGCTGGAGCCACTCCACCTTTTTATCCTTCAACTGTCGCTTCACCCCACCCTTACGTATATCACCAACATCCGTTTGT GCCACATTATGGAACCCCAGTTCCATACCCAGCTATGTATCCTCCTGGGGGTGTGTATCCTCATCCTAGTATGTCCATTACACCAAACTCAGTAGCACCA AGCACGGACACAGAGGGAAAGAGGGCCAATGGCAAAGATCAGTCTTCCTCCAAGAAGTCCAAGAGAACACCTGCAAAGAAAGCTGGAGAGAGTGGAAAAT CAGGTTCAGGGAATGATGCTGTCTCCCATAGTGGTGAAAGTGGTAGTGATGGCGGCTCATCAGACGCTAGCGATGAACAGGATTATAGTGCGAGTAAGAA GGGGAGCTTCAACCAGATGCTTGCAGATGCGAGCGCCCAAGGTGCTGTTCCTATTGTGTCTGTTCCTGGAACCAAACTAAATATTGGGATAGAATTATGG AATGCCTCTCCAGCTGCTGCAGGGACTGGACCTGCAAAATTGAGGACGAATCCCCCTGGTGGCTCATCTGCAATCGTTCCTGTTCCTGGAGCAATGCCAG AACCATGGCTTCAGGATGAAAGGGAACTTAAAAGACAAAAGAGAAAGCAGTCGAACCGGGAGTCAGCTAGAAGATCTCGATTACGCAAGCAGGCTGAATG CGAAGAGCTACAACACAGGGTACAAAACTTAACCAGAGACAATCAGACTCTAAAAAATGATGTGCTGCAACTTTCGGAGGAGTGCGAGAAGCTGAAAGCT GAGAACGAGTCCATCAAGAAGAAATTAGAGGAATCGTACAGGCCAGAAGCAATACAACAAGTTGAAGGAAACAAGGAGACTTCGTCGCCGGCTGATGAAG AGAATAGTTGA
AA sequence Show only first row Show all	>Lus10024030 pacid=23141608 polypeptide=Lus10024030 locus=Lus10024030.g ID=Lus10024030.BGIv1.0 annot-version=v1.0 MGTGEKSSPAKPSKAAASSTQEIPSAPAYPEWPGSMQVYYGAGATPPFYPSTVASPHPYVYHQHPFVPHYGTPVPYPAMYPPGGVYPHPSMSITPNSVAP STDTEGKRANGKDQSSSKKSKRTPAKKAGESGKSGSGNDAVSHSGESGSDGGSSDASDEQDYSASKKGSFNQMLADASAQGAVPIVSVPGTKLNIGIELW NASPAAAGTGPAKLRTNPPGGSSAIVPVPGAMPEPWLQDERELKRQKRKQSNRESARRSRLRKQAECEELQHRVQNLTRDNQTLKNDVLQLSEECEKLKA ENESIKKKLEESYRPEAIQQVEGNKETSSPADEENS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	1.4	0.9719
					Lus10041676 [exp]	2.8	0.9659
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	3.0	0.9647
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	5.0	0.9682
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	6.0	0.9714
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	6.0	0.9690
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006463 [exp]	6.5	0.9667
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	8.8	0.9703
AT5G49710			unknown protein		Lus10015965 [exp]	11.5	0.9581
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	12.0	0.9618

Compare expression of checked genes

Lus10024030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.