Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36740 147 / 3e-44 HD HB-5, ATHB40 homeobox protein 40 (.1) AT5G66700 132 / 3e-38 HD ATHB53, HB53, HB-8 HOMEOBOX-8, ARABIDOPSIS THALIANA HOMEOBOX 53, homeobox 53 (.1) AT2G18550 130 / 3e-37 HD HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1) AT5G03790 82 / 7e-19 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1) AT3G01470 81 / 3e-18 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT4G40060 79 / 3e-17 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 79 / 5e-17 HD ATHB6 homeobox protein 6 (.1) AT5G65310 78 / 7e-17 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT1G69780 77 / 1e-16 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT2G36610 72 / 2e-15 HD ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041719 [exp] 264 / 8e-90 AT4G36740 192 / 9e-62 homeobox protein 40 (.1) Lus10035583 [exp] 87 / 2e-20 AT5G03790 146 / 2e-43 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10008641 [exp] 79 / 2e-17 AT5G03790 152 / 4e-45 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10037218 [exp] 78 / 6e-17 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 78 / 6e-17 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 78 / 1e-16 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10022225 [exp] 75 / 6e-16 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 74 / 2e-15 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036730 [exp] 74 / 2e-15 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029500 [exp] 154 / 1e-46 AT4G36740 208 / 2e-68 homeobox protein 40 (.1) Potri.005G126100 [exp] 144 / 5e-43 AT2G18550 201 / 2e-65 homeobox-2, homeobox protein 21 (.1) Potri.002G100600 [exp] 81 / 3e-18 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.006G117700 [exp] 80 / 5e-18 AT5G03790 181 / 5e-57 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Potri.005G071900 [exp] 81 / 7e-18 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 81 / 9e-18 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.012G070900 [exp] 75 / 8e-16 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.015G065400 [exp] 75 / 1e-15 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.010G093400 [exp] 74 / 2e-15 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.008G148200 [exp] 74 / 2e-15 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10024031 pacid=23141435 polypeptide=Lus10024031 locus=Lus10024031.g ID=Lus10024031.BGIv1.0 annot-version=v1.0 ATGGACGACTTGTCCTGCAACATCCTCATCTATCCCGCTGCCGTTTATGATCCACAACCACTCCTCCTCCCTCATCCTCACCAAGGTTATCTGTCTACAG GAGGAGAGGAGCCAAATCAGAAAGCAGCAGGAAGGAGGAGAAGAAGGAAGAAGAAGGAACAATCCGGTGGAGAAGGCTCCATGCTGAAGAAGAGGAAGCT CACCGACGAGCAAGTCACCTCACTTGAACTTAACTTCGGAAACGAGCACAAATTGGAGTCCGAGCGTAAAGACCGGCTAGCTGCCGAGCTCGGACTCGAC CCTCGCCAAGTTGCCGTTTGGTTCCAAAACCGCCGTGCCCGTTGGAAGACCAAGAAGCTCGAGGAAGAATACTCCAAATTGAAATCCTCCCATGACCTTA TTACCCTCCATAAATGTCGCCTTGAATCCGAGGTATTGCAGCTGAAAGAGCAGCTAACGGAGGCAGAGAAGGAGATTCAGCGACTGTCGATGATAACGGA GCGTTCCGCTGACGTGGCTTCGAGTAACAGCCCGAGTTCTTCGCTAACGACGATGGATCCGCAGCAGCAATTTTTCGGTGGAGGGGGAGGATTCGGAGGG GTTGAAGATCAGTATCAAGATGTGTTATACAGCATGCCGGAGAGTGCATACGTTGTCAATGGGATGGAATGGGTGTACATGTGA
AA sequence Show only first row Show all	>Lus10024031 pacid=23141435 polypeptide=Lus10024031 locus=Lus10024031.g ID=Lus10024031.BGIv1.0 annot-version=v1.0 MDDLSCNILIYPAAVYDPQPLLLPHPHQGYLSTGGEEPNQKAAGRRRRRKKKEQSGGEGSMLKKRKLTDEQVTSLELNFGNEHKLESERKDRLAAELGLD PRQVAVWFQNRRARWKTKKLEEEYSKLKSSHDLITLHKCRLESEVLQLKEQLTEAEKEIQRLSMITERSADVASSNSPSSSLTTMDPQQQFFGGGGGFGG VEDQYQDVLYSMPESAYVVNGMEWVYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	5.4	0.8017
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10026192 [exp]	6.2	0.7950
					Lus10027424 [exp]	7.1	0.6792
					Lus10034741 [exp]	9.8	0.6965
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	10.4	0.7942
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	12.2	0.7591
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	12.4	0.7663
AT1G77610			EamA-like transporter family p...		Lus10018189 [exp]	14.9	0.7182
AT5G26770			unknown protein		Lus10031444 [exp]	19.3	0.7837
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	20.0	0.7572

Compare expression of checked genes

Lus10024031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.