Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14910 378 / 2e-133 HISN5B, IGPD HISTIDINE BIOSYNTHESIS 5B (.1.2.3) AT3G22425 373 / 2e-131 HISN5A, IGPD imidazoleglycerol-phosphate dehydratase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041717 [exp] 481 / 7e-174 AT4G14910 382 / 6e-135 HISTIDINE BIOSYNTHESIS 5B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087600 [exp] 384 / 1e-135 AT4G14910 381 / 2e-134 HISTIDINE BIOSYNTHESIS 5B (.1.2.3) Potri.008G152701 [exp] 313 / 8e-108 AT3G22425 316 / 6e-109 imidazoleglycerol-phosphate dehydratase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00475 [flax] [poplar] IGPD Imidazoleglycerol-phosphate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10024033 pacid=23141482 polypeptide=Lus10024033 locus=Lus10024033.g ID=Lus10024033.BGIv1.0 annot-version=v1.0 ATGGAGCTGACTCTCCGATCAGCCATCCCCAGCTCTTCCTGCTCCACGCACCGTCGGCTCAGAACGCTTTCTCAAAGAAACCATTTTCCATCTTCTCGAA TTAACTCTTCAATCTTTTCTTCGAGCCGCTCAAGAATAAACCCGCAGGTAGTATCAACAAAACCTCCAGCCTCACGCGCCGCCACTCAAATGGGAGACAA CGGCTCATCATCCACTTCCACAGCTTCACAGTTGGAATCAGTTGGAGCTCGATGCGGAGAGGTGAAGAGGGTAACGAAGGAGACCAACGTGTTCGTGAGA ATAAACTTGGATGGTACTGGGGTTTCTGATTCCTCCTCGGGGATTCCATTTCTCGATCACATGTTAGATCAACTTGCATCACACGGGCTATTTGATGTTC ATGTGAGGGCAACTGGTGACGTTCATATTGATGACCATCACACCAATGAAGATGTTGCTCTTGCTATTGGCTCGGCTTTGCTACAGGCTCTTGGCGATAG GAAAGGTATACACAGATTTGGCGATTTTTCAGCTCCTCTAGACGAAGCATTGATTCACGTTGCCTTGGATCTATCTGGAAGACCACATTTAAATTATGAT TTGCAGATTCCCACTCAGAGAGTTGGAACCTATGACACTCAGTTGGTTGAGCATTTTTTCCAATCATTGGTGAATACTTCTGGCATGACACTTCACATAC GACAGCTTGCTGGGAAGAATTCTCACCATATTATTGAGGCAACCTTCAAAGCTTTTGCCAGGGCGCTTCGACAAGCAACAGAAGCTGATCCACGGCGCCT TGGGACTGTGCCGAGCTCAAAAGGTGTTCTGTCACGTTCTTGA
AA sequence Show only first row Show all	>Lus10024033 pacid=23141482 polypeptide=Lus10024033 locus=Lus10024033.g ID=Lus10024033.BGIv1.0 annot-version=v1.0 MELTLRSAIPSSSCSTHRRLRTLSQRNHFPSSRINSSIFSSSRSRINPQVVSTKPPASRAATQMGDNGSSSTSTASQLESVGARCGEVKRVTKETNVFVR INLDGTGVSDSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDVALAIGSALLQALGDRKGIHRFGDFSAPLDEALIHVALDLSGRPHLNYD LQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEADPRRLGTVPSSKGVLSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10024033 [exp]	0	1
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10036653 [exp]	2.6	0.8502
AT5G17070			unknown protein		Lus10008757 [exp]	10.6	0.8053
AT5G36930			Disease resistance protein (TI...		Lus10012311 [exp]	11.3	0.7916
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	16.7	0.8430
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	19.0	0.8100
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	29.9	0.7698
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	34.5	0.7948
AT1G33970			P-loop containing nucleoside t...		Lus10005300 [exp]	52.9	0.7776
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	52.9	0.7888
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10029662 [exp]	58.1	0.7803

Compare expression of checked genes

Lus10024033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.