Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36760 879 / 0 ATAPP1 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) AT3G05350 460 / 6e-154 Metallopeptidase M24 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041716 [exp] 1159 / 0 AT4G36760 987 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Lus10029923 [exp] 477 / 1e-160 AT3G05350 978 / 0.0 Metallopeptidase M24 family protein (.1) Lus10004479 [exp] 445 / 6e-150 AT3G05350 910 / 0.0 Metallopeptidase M24 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029700 [exp] 961 / 0 AT4G36760 1015 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.013G021400 [exp] 474 / 2e-159 AT3G05350 1025 / 0.0 Metallopeptidase M24 family protein (.1) Potri.007G030050 [exp] 338 / 4e-113 AT4G36760 397 / 4e-136 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145576 [exp] 171 / 4e-51 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.T045100 [exp] 171 / 4e-51 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145584 [exp] 90 / 4e-22 AT4G36760 85 / 2e-21 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0356 [flax] [poplar] AMP_N-like PF01321 [flax] [poplar] Creatinase_N Creatinase/Prolidase N-terminal domain CL0356 [flax] [poplar] PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10024034 pacid=23141484 polypeptide=Lus10024034 locus=Lus10024034.g ID=Lus10024034.BGIv1.0 annot-version=v1.0 ATGGCGGAAATCCTCTCGTCTCTACGATCTCTAATGGCTGCACACTCTCCTCCTCTCGATGCCTTGGTCGTACCATCTGAAGATTATCATCAGAGCGAGT ATGTCTCTGGACGTGACAAGAGGCGTGAGTTCGTTTCTGGCTTCACCGGAAGCGCTGGGTTGGCTCTTATCACTAAGGATCAGGCAAGGTTGTGGACAGA TGGACGCTACTATCTGCAGGCTGAGAAACAACTTAGTCATGAGTGGACTCTTATGCGTTTGCTTGAGGATCCTACTGTGGATGCCTGGATGGCTGATAAT CTGCAAGAGGAGGCTTGTATTGGAGTTAATCCGTGGTGTATATCAGCGGACACAGCCCGTAGATGGGAGCATGCTTTTGCAAAGAAACAACAGAAGCTAG TTCAAACTGCTACTGATTTGGTGGATGAGGTCTGGAAAAGCCGTCCAGCAGATGAAGCCAATCCTGTTACAGTCCAGCCACAAGAGTTTACTGGTCGTTC AGTTGCGGAGAAGCTAAGTGACTTGAGGGAAAAGTTGAAAACTTCAAAGGCTCGTGGTATTATTATTACCACCCTAGATGAGGTTGCTTGGTTATATAAT ATTCGAGGAAGTGACGTGCCCTACTGTCCGGTTGTGCATGCATTTGCTATTGTGACACTTAACTCTGCTTTCCTTTATGTAGACAAAAAGAAGGTGTCTT CTGAGGTAAATTCCTACATGACAGATAATGCAATTGAAGTCCGGGATTACACTGCAGTGAGCTCAGATGTGCTACTGCTTGCATCTGATAAGCTTGATTC CTCGAGTACCATAAAAGGAATGCCTGATACTGTTGGAAATGGTACAACTACAGCAGAAGGGCATGAAATTGACCTTGTATGGGTTGACTCTGCGTCATGC TCCTTTGCTTTGTATTCAAAATTGAATTCTGATAAGGTGTTCCAACGGCAGTCACCATTGGCCCTTCCAAAAGCTCTGAAGAACCCAGTGGAGTTGGATG GTTTGAGAAATGCACACATAAGGGATGGTGCTGCTGTTGTACAATATCTTGTTTGGTTGGATAAACAGATGCAAGATATGTATGGGGCTTCTGGTTACTT CGTGGAAGGGGAGACTGACAAGAAGAAAAAAGATCTGGGAACTACAAAACTGACTGAGGTGACGGTTAGCGACAAGCTGGAGAGTTTCCGGGCATCAAAA GAGCATTTCAGAGGCTTGAGTTTTCCTACCATATCATCAGTTGGTCCAAATGCTGCAATCATCCATTATGGTCCTCAGCGTGAAACATGTGCCGAACTTG ATCCAGATAGGATCTACCTGTTTGATTCCGGAGCACAGGTCCTTAAGGGTCACATTGGACTGGGTAATGCCCGATTTCCTAATGGAACCAATGGTAACGC ACTTGACATTCTTGCTCGAATTCCTTTGTGGAAGAGCGGTCTTGATTATCGTCATGGTACTGGCCACGGTATTGGGTCATTTCTATTTGTTCATGAAGGA CCTCATCTGATCAGCTTCAGGCCATCAGCTCGGAACGTTCCAATCCAAGCTTCCATGACAGTAACAGATGAGCCTGGATACTATGAGGATGGCAACTTCG GCATACGGCTGGAGAATGTGCTTGTAGTCAACGAAGCTGACACCAAATTCAACTTTGGTGGCAAAGGCTACTTGGAATTCGAGCACATAACATGGGCACC GTATCAGAAAAAGCTGATAGATATCAGCATGCTAGTCCCGGAAGAGGTGGAATGGCTGAACACATACCATTCGAGGTGCAGGGAGATTCTTGCACCGTAT TTGGACGACGCTGAGAAGTCATGGCTAAACAATGCCACCGCGCCCGTTACAGTGGCTTAA
AA sequence Show only first row Show all	>Lus10024034 pacid=23141484 polypeptide=Lus10024034 locus=Lus10024034.g ID=Lus10024034.BGIv1.0 annot-version=v1.0 MAEILSSLRSLMAAHSPPLDALVVPSEDYHQSEYVSGRDKRREFVSGFTGSAGLALITKDQARLWTDGRYYLQAEKQLSHEWTLMRLLEDPTVDAWMADN LQEEACIGVNPWCISADTARRWEHAFAKKQQKLVQTATDLVDEVWKSRPADEANPVTVQPQEFTGRSVAEKLSDLREKLKTSKARGIIITTLDEVAWLYN IRGSDVPYCPVVHAFAIVTLNSAFLYVDKKKVSSEVNSYMTDNAIEVRDYTAVSSDVLLLASDKLDSSSTIKGMPDTVGNGTTTAEGHEIDLVWVDSASC SFALYSKLNSDKVFQRQSPLALPKALKNPVELDGLRNAHIRDGAAVVQYLVWLDKQMQDMYGASGYFVEGETDKKKKDLGTTKLTEVTVSDKLESFRASK EHFRGLSFPTISSVGPNAAIIHYGPQRETCAELDPDRIYLFDSGAQVLKGHIGLGNARFPNGTNGNALDILARIPLWKSGLDYRHGTGHGIGSFLFVHEG PHLISFRPSARNVPIQASMTVTDEPGYYEDGNFGIRLENVLVVNEADTKFNFGGKGYLEFEHITWAPYQKKLIDISMLVPEEVEWLNTYHSRCREILAPY LDDAEKSWLNNATAPVTVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10024034 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	2.6	0.8224
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	5.2	0.7864
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	6.5	0.7470
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	8.4	0.7901
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	14.1	0.7522
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	14.9	0.7514
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10027596 [exp]	18.7	0.7441
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	19.6	0.7378
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	21.2	0.7318
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	22.2	0.7447

Compare expression of checked genes

Lus10024034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.