Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50740 486 / 2e-169 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G66690 482 / 1e-167 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 473 / 3e-164 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 391 / 3e-132 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 386 / 2e-130 UDP-Glycosyltransferase superfamily protein (.1) AT4G01070 352 / 1e-116 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 331 / 1e-108 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 322 / 4e-105 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 304 / 2e-99 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 251 / 4e-78 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041715 [exp] 958 / 0 AT3G50740 478 / 6e-166 UDP-glucosyl transferase 72E1 (.1) Lus10024037 [exp] 446 / 4e-153 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1) Lus10041713 [exp] 443 / 3e-152 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10005950 [exp] 380 / 1e-127 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 374 / 2e-125 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003944 [exp] 343 / 4e-113 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 342 / 1e-112 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 332 / 4e-109 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 317 / 5e-103 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G030400 [exp] 565 / 0 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 490 / 7e-171 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 475 / 7e-165 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.007G030500 [exp] 464 / 1e-160 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G096100 [exp] 369 / 1e-123 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 360 / 4e-120 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 357 / 2e-118 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 346 / 1e-114 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 327 / 3e-107 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041900 [exp] 303 / 4e-98 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10024035 pacid=23141587 polypeptide=Lus10024035 locus=Lus10024035.g ID=Lus10024035.BGIv1.0 annot-version=v1.0 ATGCAATCCTCCGGCGCCGGAAGACCCCACGTTGCACTGCTCGCCAGCCCCGGGATGGGCCACCTCATCCCGGTCCTCGAGCTCGGCAAGCGCCTCATCG CCAACCACGACATCTCCATCACCATCTTCGTCGTCTCCACCGATGCCGCGACCTCCAAATCTCTCCTCAAAACCTGCCCCAGCACCACCAACCTCTCCAT CGTCCCGCTCCCGCCGGTCGACATATCCGCACACGTTGAACCCTCCGACCACTTCGTCACCAAGCTCATCGTCATGATGCAACAGTCCGTCTCCAACCTC CGCTCCGCAATCTCGCTCATGCGGACCCCACCGGCCGCACTCATAGTGGACATCTTCGGCGCCGACTCCTTCTCTGTCGCCGACGAGTTCGGCATGCTCA AGTATGCTTTCATCACCACCACCGCCTCTTTCCTTGCCGTCACCGTCTACGGGGGCGTCTCCGAGGACGAGGTGGTCGAGCACGTTACGTTGAAAAAACC GCTCCACGTACCCGGTTGCAACCCGATCCGGTTCGAAGACACACTCCACGCGTACCTCGATTACGGAGACCGGGTTTTCGACGAGGCCCAAAAGCTCGGG GCCGGGTTCGCTTTGGCGGACGGGATCTTAATCAACACGTGGGAAGATCTGGAGGTTCAAACCCTCGCTGCTCTAAGGAGCGAGAAGCATTTAAAGAACA TAGTCAAAGCTCCAGTCTATCCAGTCGGACCTCTGGTCCGACCTTCTCAACCGACCGGTTCAACCGAAAACAACACGGTTCTGGAATGGCTGGACGAGCA GCCCAGCGAGTCTGTCATCTACGTGTCGTTCGGAAGCGGTGGGACCCTCTCCCGGGCCCAAATGGTCGAGCTGGCATGGGGACTCGAGCTGAGCGGGCAT CGGTTCATTTGGGTAGTCCGCCCACCAGTTGACGACGACGCTTCCGCCGCATTTTTCTCCTTGGGGAAAGCATCTGAATCAGATGGGCCCCAGAGGTATT TGCCAGAAGGATTCATTGCCAGGACGAACGACAGAGGAATGGTGGTCCCCATGTGGGCCCCTCAGGCCGAGATTCTCGCTCACGAATCCGTGGGCGCGTT CGTGTCTCACTGCGGGTGGAACTCGACTCTAGAGAGCATCACCAACGGGGTTCCGATGGTGGTGTGGCCGCTGTACGCCGAGCAGAATCTGAACGCGGTG CTTTTGACGGAGGAGCTCCGGGTGGCGGTGAGGCCGGCGGTGAACGACGACGTCGGCGGCGTGGTGAAGAGAGGGGAGATCGAGAATTTGGTGAGGAAAG TGATGGAAGGAGAAGAAGGACAGTGTATAAGGGAGAGGGTTAAGGAAGTAATGGAAGACGGCGGTAGTGCTCTGAGCCGGAAACTAAACGGATCGTCGTT TAGGGCGCTGGAGAAAGTCGCTGGAGAATGTGAGCTGAACCACCGCAGGGTCAACGCTAAAGCTCAAGGTGCTTGA
AA sequence Show only first row Show all	>Lus10024035 pacid=23141587 polypeptide=Lus10024035 locus=Lus10024035.g ID=Lus10024035.BGIv1.0 annot-version=v1.0 MQSSGAGRPHVALLASPGMGHLIPVLELGKRLIANHDISITIFVVSTDAATSKSLLKTCPSTTNLSIVPLPPVDISAHVEPSDHFVTKLIVMMQQSVSNL RSAISLMRTPPAALIVDIFGADSFSVADEFGMLKYAFITTTASFLAVTVYGGVSEDEVVEHVTLKKPLHVPGCNPIRFEDTLHAYLDYGDRVFDEAQKLG AGFALADGILINTWEDLEVQTLAALRSEKHLKNIVKAPVYPVGPLVRPSQPTGSTENNTVLEWLDEQPSESVIYVSFGSGGTLSRAQMVELAWGLELSGH RFIWVVRPPVDDDASAAFFSLGKASESDGPQRYLPEGFIARTNDRGMVVPMWAPQAEILAHESVGAFVSHCGWNSTLESITNGVPMVVWPLYAEQNLNAV LLTEELRVAVRPAVNDDVGGVVKRGEIENLVRKVMEGEEGQCIRERVKEVMEDGGSALSRKLNGSSFRALEKVAGECELNHRRVNAKAQGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10024035 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	5.0	0.8598
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	6.0	0.8374
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	12.8	0.8282
AT1G23880			NHL domain-containing protein ...		Lus10030850 [exp]	14.5	0.7870
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	15.7	0.8281
AT5G13660			unknown protein		Lus10005963 [exp]	16.7	0.8264
					Lus10006164 [exp]	18.3	0.8264
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	19.8	0.8264
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	21.2	0.8264
					Lus10001790 [exp]	22.4	0.8264

Compare expression of checked genes

Lus10024035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.