Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18570 413 / 1e-140 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 411 / 1e-139 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G66690 389 / 5e-131 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 387 / 3e-130 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT4G01070 353 / 4e-117 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT2G18560 344 / 7e-115 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 338 / 1e-111 UDP-Glycosyltransferase superfamily protein (.1) AT1G01420 339 / 2e-111 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 324 / 1e-105 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 221 / 3e-66 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041713 [exp] 915 / 0 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10041715 [exp] 448 / 8e-154 AT3G50740 478 / 6e-166 UDP-glucosyl transferase 72E1 (.1) Lus10024035 [exp] 446 / 6e-153 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1) Lus10029452 [exp] 364 / 3e-121 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 364 / 3e-121 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003944 [exp] 357 / 2e-118 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 349 / 1e-115 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 343 / 5e-113 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 329 / 1e-107 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G030400 [exp] 514 / 2e-180 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030500 [exp] 503 / 8e-176 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030300 [exp] 461 / 3e-159 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 452 / 8e-156 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041800 [exp] 371 / 5e-124 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 355 / 1e-117 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 346 / 3e-114 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 334 / 7e-110 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 324 / 7e-106 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041900 [exp] 297 / 8e-96 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10024037 pacid=23141563 polypeptide=Lus10024037 locus=Lus10024037.g ID=Lus10024037.BGIv1.0 annot-version=v1.0 ATGGAAACGTCAACCGTCGACGTCAACCACCACCCACAACCTCCTCACATCGTCCTCCTCGCCAGCCCAGGCACCGGCCACCTCATCCCGGTCCTTGAGC TCGGCATACGCCTCGTCACACACCACAACGCTACCGTCACCGTCTTTGTAGTAGCCACCGATCACTCCTCCCCGGCCGAGGCCCACTTAATCCTCGACGC CACCGCCAGGGCTCATTATTCTTCGAAGAATAACACATTCAACGTGGTCAAACTCCCGCCGCCGGACATCTCCAACCTCACCGGCCCGGAAACGGCCGTC GTGACCCACATCTGCATGCTGATGAGGGAGACCAGACCGACCTTACGCTCCGCCATGAGGTCGCTGGAGGTCCCGCCCGCGGCTCTGGTCGTCGATCTTT TCGGGACGGAGTCGTTCGCGATAGCGGACGAGATGGAGATTGGGAAGTACTTATTGGTGACTTCGAATGCGTGGTTCACCGCTCTCGCCCTTCACACGCC GGCTTTGGATAGGGAAGTGGATGGTCAGTACGTTGACCAGACTGAACCGTTGACCATTCCGGGTTGTCGTTCGATTCGACCTGATGAAGTGGTTGATCCC ATGTTGGACCGGAACGATATGCAGTACGTCGAGTACAAACGCACCGGAGCTGAGTTCGCGAAAGCTGACGGTATACTCATAAACACTTGGGAGGATCTGG AACCATCCACCCTCGCTGCACTTCGAAACGACAAGTTCTTCGGTCGTAGCATCATCAAGGGTGACGTTCTATCAATCGGCCCGCTCGTCCGACCCAGCAA TAACCAAAGGGGTCCGACTGAGGATGACGAGTTATTCTCTTGGTTAGACAAGCAACCCAAACAGTCTGTTATCTACGTGTCATTTGGCAGCGTTGGGACC CTATCCACCCACCAGCTAAATGAGCTGGCTTATGGGCTCGAACTTAGCAAGCAAAGGTTCGTTTGGGTGGTACGTCGCCCCACTGATTCCAATGACTCAG CCGGTGGGTCCGGCGAGATACCCGGCCGACTCAACTATCTCCCGGGCGGGTTTTTGGAAAGAACCCGATACGTGGGCATGGTGGTCCCGAATTGGGCCCC ACAGGCCGAAGTTCTGAGTCACCCTTCGGTTGGGTGGTTTCTCAGTCATTGCGGGTGGAACTCGACGCTGGAAAGCGTGACAAACGGTGTGCCGATGGTG GCTTGGCCTATGTACGCGGAACAGAGGATGAACTCGACGCTGTTGGCGGAGGAATTGAAGGTCGCGGCGAGGACCAAAACGTTGCCGTGGAGGGGAGTTG TGGGGAGGGATGAGATAGCGGAGTTGGTTAAGAAGGTGATGGTTGGTGAAGAAGGGGTTTTGATAAGGGAGAAGGTGAACGAGGTTAAATGGAGTGGGGA GAAGGTGAACGAGGTTAAATGCAGTGGGGAGAAGGCATTGAAAGAAGGGAGTGGTTCTTCTTTCAGAGCTTTGGCTAGTGTGGTTGATAAGTGTACTTGT CGTTATGCCACCAAATTTTAA
AA sequence Show only first row Show all	>Lus10024037 pacid=23141563 polypeptide=Lus10024037 locus=Lus10024037.g ID=Lus10024037.BGIv1.0 annot-version=v1.0 METSTVDVNHHPQPPHIVLLASPGTGHLIPVLELGIRLVTHHNATVTVFVVATDHSSPAEAHLILDATARAHYSSKNNTFNVVKLPPPDISNLTGPETAV VTHICMLMRETRPTLRSAMRSLEVPPAALVVDLFGTESFAIADEMEIGKYLLVTSNAWFTALALHTPALDREVDGQYVDQTEPLTIPGCRSIRPDEVVDP MLDRNDMQYVEYKRTGAEFAKADGILINTWEDLEPSTLAALRNDKFFGRSIIKGDVLSIGPLVRPSNNQRGPTEDDELFSWLDKQPKQSVIYVSFGSVGT LSTHQLNELAYGLELSKQRFVWVVRRPTDSNDSAGGSGEIPGRLNYLPGGFLERTRYVGMVVPNWAPQAEVLSHPSVGWFLSHCGWNSTLESVTNGVPMV AWPMYAEQRMNSTLLAEELKVAARTKTLPWRGVVGRDEIAELVKKVMVGEEGVLIREKVNEVKWSGEKVNEVKCSGEKALKEGSGSSFRALASVVDKCTC RYATKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18570			UDP-Glycosyltransferase superf...		Lus10024037 [exp]	0	1
AT1G71970			unknown protein		Lus10017920 [exp]	2.0	0.8302
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	3.5	0.8458
AT5G38790			unknown protein		Lus10003044 [exp]	3.7	0.8172
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	9.1	0.8431
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	13.9	0.8009
AT5G20110			Dynein light chain type 1 fami...		Lus10030069 [exp]	14.1	0.8222
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	14.3	0.8320
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	20.1	0.8278
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	22.0	0.7923
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	25.5	0.8159

Compare expression of checked genes

Lus10024037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.