Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65110 1122 / 0 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06310 270 / 3e-81 ACX6 acyl-CoA oxidase 6 (.1) AT1G06290 268 / 3e-80 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT2G35690 216 / 5e-61 ACX5 acyl-CoA oxidase 5 (.1) AT4G16760 211 / 3e-59 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT3G51840 64 / 1e-10 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041711 [exp] 1317 / 0 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10016249 [exp] 283 / 8e-86 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10039894 [exp] 278 / 9e-84 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10002177 [exp] 234 / 3e-69 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10040183 [exp] 221 / 2e-62 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 218 / 7e-62 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 215 / 3e-61 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 214 / 2e-60 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10027811 [exp] 59 / 6e-09 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090400 [exp] 1128 / 0 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 1112 / 0 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.013G123500 [exp] 279 / 2e-84 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 278 / 3e-84 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.003G079200 [exp] 217 / 2e-61 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 204 / 4e-57 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.006G101800 [exp] 56 / 4e-08 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1) Potri.016G118000 [exp] 55 / 1e-07 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024038 pacid=23141548 polypeptide=Lus10024038 locus=Lus10024038.g ID=Lus10024038.BGIv1.0 annot-version=v1.0 ATGGAACCCGAGAACCCCAAAATTCCGGCCTCCGATGAAGACACTCAGTTCATCGTTTCCCGCCGCATCCGACGGCTCTCCCTCCACCTGACCCCAATCC CGAGCCCGCTGTTGGAGATCGACGGCGGTGAGGGACAGATAGGGATGGTGACGTGCGCGAGGGCGAAGAAGCTTGAGGTTGACACGGGGAAGCTGTCGGA TTACATGAGAGGAAGGCACAAGGATGTGCAGGAGAAGGTTTTCGAGTATTTCGAGTCTAGGCCGGAACTTCAGACGCCGTTGGAGATCTCCAAAGACGAT CACAGGAAGCTCTGCTGGCGTCAGCTTGTGGGCTTGGTTAGGGAGGCTGGGATTAAGCCCTTTGGGTGTGTGGTTGATGATCCCGCCAAGTATTTCGCCA TCCTTGAAGCTGTTGGTAGCGTGGATATGTCGCTTGGGATCTTGATGGGAGTTCAGTACAGTCTTTGGGGTGGTTCCGTACTCAACCTAGGAACTAAAAA GCACAAGGATAAGTATTTTGATGGCATAGACAATTTGGACTATCCCGGTTGTTTTGCGATGACGGAGCTGCATCATGTTAATGGAAAGTTTGCAACTGTT TTTGCCAGGCTGATATTGCCTACTCATGACTCTAAGGGAGTTTCCGATATGGGTGTTCATGCATTCATTGTCCCCATAAGGCATTTCGAGACTCATGAAA CACTTCCGGGTATTGAAATTCATGATTGCGGCCAAAAGGTTGGTCTGAACGGGGTAGATAACGGAGCACTGAGATTCAGTAAAGTAAGAATTCCCCGTGA CAACCTTCTTAATAGATTTGGCGACGTGTCTCGAGATGGCAAGTATACAAGTAGCCTTCCAACTGTAAATAAAAGATTTGCTGCAACACTGGGGGAACTC GTAGGGGGAAGAGTTGGCCTTGCATATTCCTCTGTATCTGTTCTCAAGCTTGCCGGCACAATTGCTATTCGTTATTCTTTACTCAGGCAGCAGTTTGGCC CACCCAAACAGCCTGAAATTAGTATCCTTGATTATCAGTCGCAGCAGCACAAGCTCATGCCTATGCTTGCGTCAACTTATGCTTTCCATTTTGCTACCTC GTATTTGGTAGAGATGTACTCTGAGATGAAAAGAACTCACGACGAACAATTGGTTGGAGATGTTCATGCACTTTCTGCTGGCCTCAAAGCTTATGTGACA TCCTATACGGCTAGGTCACTGAATGTCTGCAGGGAATCATGTGGAGGCCATGGGTATGCTGCTGTAAACCGGTTTGGTACTCTGAGAAATGATCACGATA TTTTCCAGACGTTTGAAGGAGACAACACAGTGCTTCTCCAGCAGGTCGCAGGGGATCTCTTAAAGCGATACCAGGAAAAGTTCCAAGGTGGAACCCTGAC AGTTACGTGGAATTATTTAAGAGAGTCAATGAATTCATATTTGTCTCAGCCCAATCCAGTGACTGCACGGTGGGAAGGGGAAGATCACTTGCGAGATCCC AAGTTCCAGTTGGATGCTTTCAGATATCGAACATCTCGATTGCTCCAAAGTGTTGCAGTCCGTCTTCGCAAGCACTCTAAGACCCTTGGAGGATTCGGTG CTTGGAACCGGTGCTTGAATCACCTTCTCATCCTGGCAGAGTCTCATATCGAGACCGTCGTCCTTGCAAAGTTTATTGAGGCAGTGCAGAACTGCCGGGA TCCAAGTGCACGATCTGCTCTGAAACTTGTATGTGATCTCTACGCCTTGGATCGAATCTGGAAGGACATTGGAACTTATCGGAATGTTGACTATGTCGCA CCAAACAAAGCTAAGGCAATCCACAAGCTGGCAGATTACTTGAGTTTCCAGGTTAGAAATATAGCTGGGGAATTGGTAGATGCATTTGATCTTCCAGACA ATGTCACCAGGGCACCAATTGCGATGCAGTCAGAAGCTTACTCGCAGTATACCAATTACGTTGGATTCTAA
AA sequence Show only first row Show all	>Lus10024038 pacid=23141548 polypeptide=Lus10024038 locus=Lus10024038.g ID=Lus10024038.BGIv1.0 annot-version=v1.0 MEPENPKIPASDEDTQFIVSRRIRRLSLHLTPIPSPLLEIDGGEGQIGMVTCARAKKLEVDTGKLSDYMRGRHKDVQEKVFEYFESRPELQTPLEISKDD HRKLCWRQLVGLVREAGIKPFGCVVDDPAKYFAILEAVGSVDMSLGILMGVQYSLWGGSVLNLGTKKHKDKYFDGIDNLDYPGCFAMTELHHVNGKFATV FARLILPTHDSKGVSDMGVHAFIVPIRHFETHETLPGIEIHDCGQKVGLNGVDNGALRFSKVRIPRDNLLNRFGDVSRDGKYTSSLPTVNKRFAATLGEL VGGRVGLAYSSVSVLKLAGTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATSYLVEMYSEMKRTHDEQLVGDVHALSAGLKAYVT SYTARSLNVCRESCGGHGYAAVNRFGTLRNDHDIFQTFEGDNTVLLQQVAGDLLKRYQEKFQGGTLTVTWNYLRESMNSYLSQPNPVTARWEGEDHLRDP KFQLDAFRYRTSRLLQSVAVRLRKHSKTLGGFGAWNRCLNHLLILAESHIETVVLAKFIEAVQNCRDPSARSALKLVCDLYALDRIWKDIGTYRNVDYVA PNKAKAIHKLADYLSFQVRNIAGELVDAFDLPDNVTRAPIAMQSEAYSQYTNYVGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	1.0	0.9824
AT3G17510		CIPK1, SnRK3.16	SNF1-RELATED PROTEIN KINASE 3....		Lus10018334 [exp]	3.7	0.9513
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	5.2	0.9464
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	5.7	0.9583
AT3G01430			unknown protein		Lus10014527 [exp]	6.8	0.9602
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	8.5	0.9599
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	10.2	0.9557
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	11.8	0.9370
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	17.6	0.9300
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	18.3	0.9247

Compare expression of checked genes

Lus10024038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.