Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39790 602 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 326 / 5e-101 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 201 / 2e-54 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 200 / 3e-54 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 199 / 1e-53 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 189 / 8e-51 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 168 / 1e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 168 / 2e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 154 / 5e-39 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G52320 135 / 7e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041710 [exp] 1234 / 0 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 296 / 7e-90 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025550 [exp] 296 / 2e-89 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 210 / 7e-59 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 203 / 1e-55 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 202 / 3e-55 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 197 / 1e-54 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10020009 [exp] 186 / 2e-52 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1) Lus10014445 [exp] 192 / 1e-51 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090300 [exp] 806 / 0 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 801 / 0 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G197700 [exp] 307 / 2e-93 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G159000 [exp] 303 / 3e-92 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 226 / 7e-64 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 223 / 5e-63 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.006G077000 [exp] 222 / 3e-62 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 220 / 9e-62 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 209 / 3e-57 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 204 / 1e-55 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10024039 pacid=23141596 polypeptide=Lus10024039 locus=Lus10024039.g ID=Lus10024039.BGIv1.0 annot-version=v1.0 ATGGGTTCAACGAGCTCCAAGCCGGACAAAGTTGACGTCTTGCGGCTGTGCAAAGAGCGCAAGAGGTTCATAAAGCAAGCAATCGACTCCAGGTACAATC TCGCTGCAGCTCATCTTTCCTACATCGACTCCCTCAAGAACGTCGGCGTATCCCTCCGCCGGTTCGCCGAGGCAGAACTTTCCACAGAATCCTCTCTCTC CACCGCCGAGCTTGACAATGATAAGTCCCCATCACATTCTTCTTACCCTTCCCCTTCTCACAACGCCTCCGACTCCCCCTTCCACAATGAAAGCCCAGCC GCTCCGCCGGCGGTGAACGTCAGCTACATGAAATCCGGCGGCGGTGTTGGTACTACGGTGACGGTTAAGGTGAACTTGCAGGAAGAGAATAGGATGAGGA GCAGTATTGATGGGTTTGATGAAGATGAGGAAATGTTGAGTTTCTCAGTGATGCCACCTCCTCCACCTCCACCGTTTAGTGGGTCGTGGGACTACTTCGA CACCAACAGTGATGATCAGTATGAGAGTTTCAGGTTCGTGGCGGCGCAGAATAATGAATTGGAATTGTTGGACTGGAATGGAAGGGCTGCTGGTGCTAGT TCTGGAGTGATAGATGCTAAGGGGAAATGGGTGGGAGTTGGTTCGGGGAATGAAGCTCAATGTAAAGTTGTTGTTGAGAATTCCAGCCATGAAATGGAGC TGGAGCGAAAAGGTTTGAGTCCAGGAGGTAAAATCCAGCCAGGATTGAAGAAGGAAAAACGAGTTGGATCCAATAATGGTGTAGCATCCCAGAGAGAAGA TCCATCAGAGTTCATTACTCATAGAGCTAAGGACTTTGCTTCCAGCATTAAAGAGATTGAGCATCGCTTCTTCAGGGCATCAGAGTCAGGAAAGGAGATT TCTAGAATGCTCGAGGCTAATAATATCAGGATTGGCTACTCCGAAGCCAAAGGGAGGTCTTCTGCGTCAGCAGTTTTGGAAGCGTTCAATCTTGTTTGTT GCCAAGGAAGGACTTCACTTGTTTCCAATGAACCTGCAGAAAATGGAACAAAGGTCATAACTTGGAAGAGGACTACATCATTAAGATCATCTTCATCAAG AAATCCACTTAAAAATGGGATAAAAGATGATGTCTCTGAAAGTGGTAGTGACTTTGCTGAGGAGTTCTGCATGATTTCAGGAAGTCATTCCTCCACACTT GACAGACTCTACGCTTGGGAAAGAAAGTTGTATGATGAAGTTAAGGCTAGTGAATCTATCAGGAAGGAGTATGACCAGAAATGTGATAAGCTCAGACACC AATTTGCAAAGGATCATAGTGCTCAACTCATCGACAAGACTCGAGCATCTGCCAAAGATCTACACTCGCGGATAAGAGTTGCCATTCATTCTGTGGATTC AATATCGAAAAGAATCGAGAAAATGAGGGATGAAGAACTGCATCCACAACTTCTGGAGCTTGTTCAAGGGTTGATCCGAATGTGGAAGGCCATGGTTGAA TGCCACCATGCACAATACATTACCATCTCCTTAGCATACCATTCAAGAACTACAGCAGCAACACCACAGGGAGATGCCAGGCAAGTGATGCTGTCACAGC TACTGCACGAGATAGAGTGCTTTGGATTAGGCTTTACAAACTGGGTTAACAGTCATACATCCTACATTGAGGCTCTTAACGGGTGGCTGCAGCACTGCAT CATACAACCACAAGAGCGTTCAAAGAACAGAAGACCTTTCTCCCCTCGCAGAGTTTTGGCTCCACCCATCTTCGTTCTCTGCCGGGATTGGTCAGCTGGC ATCAAAGCCTTGCCATCGGAGGAACTTAATGATTCCATAAAGTCATTCTTATCTGACGTGCGCCAGCTAATGCATCAACCAACAGAGCCACTAGGAAAGA ATAACAAAGATGCAGCTGATGGAGAAATAGAGACCAAAGATCAGTTAAAGAGTGAGGGTGTATCTACAAAACTGAGCTTCATCCATACTAGTCTGACGAA GGTTCTAGACAGATTAAACAAGTTCTCTGAAGCTTCACTGAAAATGTACGAGGATATCAGACAAAAGAGTGAAGCAGCTCGAGTTGCATATTCAACTTGC AGGCCTGTTAGGTTTTAA
AA sequence Show only first row Show all	>Lus10024039 pacid=23141596 polypeptide=Lus10024039 locus=Lus10024039.g ID=Lus10024039.BGIv1.0 annot-version=v1.0 MGSTSSKPDKVDVLRLCKERKRFIKQAIDSRYNLAAAHLSYIDSLKNVGVSLRRFAEAELSTESSLSTAELDNDKSPSHSSYPSPSHNASDSPFHNESPA APPAVNVSYMKSGGGVGTTVTVKVNLQEENRMRSSIDGFDEDEEMLSFSVMPPPPPPPFSGSWDYFDTNSDDQYESFRFVAAQNNELELLDWNGRAAGAS SGVIDAKGKWVGVGSGNEAQCKVVVENSSHEMELERKGLSPGGKIQPGLKKEKRVGSNNGVASQREDPSEFITHRAKDFASSIKEIEHRFFRASESGKEI SRMLEANNIRIGYSEAKGRSSASAVLEAFNLVCCQGRTSLVSNEPAENGTKVITWKRTTSLRSSSSRNPLKNGIKDDVSESGSDFAEEFCMISGSHSSTL DRLYAWERKLYDEVKASESIRKEYDQKCDKLRHQFAKDHSAQLIDKTRASAKDLHSRIRVAIHSVDSISKRIEKMRDEELHPQLLELVQGLIRMWKAMVE CHHAQYITISLAYHSRTTAATPQGDARQVMLSQLLHEIECFGLGFTNWVNSHTSYIEALNGWLQHCIIQPQERSKNRRPFSPRRVLAPPIFVLCRDWSAG IKALPSEELNDSIKSFLSDVRQLMHQPTEPLGKNNKDAADGEIETKDQLKSEGVSTKLSFIHTSLTKVLDRLNKFSEASLKMYEDIRQKSEAARVAYSTC RPVRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	0	1
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	1.0	0.9588
AT3G06868			unknown protein		Lus10001474 [exp]	3.2	0.9042
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	3.2	0.9107
AT3G13275			unknown protein		Lus10020466 [exp]	3.6	0.8978
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	4.7	0.9309
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	5.3	0.9115
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	6.7	0.9044
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	6.9	0.9098
AT1G77270			unknown protein		Lus10029729 [exp]	9.2	0.9098
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	9.5	0.8655

Compare expression of checked genes

Lus10024039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.