Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10120 43 / 4e-05 EIL Ethylene insensitive 3 family protein (.1) AT5G65100 39 / 0.001 EIL Ethylene insensitive 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041709 [exp] 257 / 2e-84 AT5G65100 358 / 6e-119 Ethylene insensitive 3 family protein (.1) Lus10014331 [exp] 89 / 3e-21 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024040 pacid=23141451 polypeptide=Lus10024040 locus=Lus10024040.g ID=Lus10024040.BGIv1.0 annot-version=v1.0 ATGTGCCCGCAGAGCAAGCTAGGGTTAGGGTTTAGTGACAAGAACACCAGATCTGTTCATCAATTAGAGTGCGCGTATCCAGAAAAATCACCTGAAGATA CCAGTCGGGAAAACAGCGGCAGCGAGGACTATCCTTCAGTCGTCAGCAGCAACACTGCTTCCTTGTTGAGCACTGATCAGAGTAGTAGTCTATTGTTGAG CCCTCGTGCGCTGAGCGTCACCGATTGGGCAAACATGGTGTTGGAAAGTACCAACCTCTATGATCCGCCATTGGAAACAGGGGAAGCAGTTGCAGAGTAT TGGACGAGTGATCGCGGTGGCGGAATTGAAGAATTACGTTACGAGATGCAGGAGAGAGGAGAGTTGGATTTGAATCTACAACCATTGTCGTCGTTGGATG ATCGTAACGGCGTTGCTGATACAACTTCAATCTGGGATTTGGGTTATGAAGAACCAGCTGGCCCCGCCAACTAA
AA sequence Show only first row Show all	>Lus10024040 pacid=23141451 polypeptide=Lus10024040 locus=Lus10024040.g ID=Lus10024040.BGIv1.0 annot-version=v1.0 MCPQSKLGLGFSDKNTRSVHQLECAYPEKSPEDTSRENSGSEDYPSVVSSNTASLLSTDQSSSLLLSPRALSVTDWANMVLESTNLYDPPLETGEAVAEY WTSDRGGGIEELRYEMQERGELDLNLQPLSSLDDRNGVADTTSIWDLGYEEPAGPAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10120	EIL		Ethylene insensitive 3 family ...		Lus10024040 [exp]	0	1
AT2G17030			F-box family protein with a do...		Lus10013995 [exp]	9.2	0.7248
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020492 [exp]	15.6	0.6777
AT5G52390			PAR1 protein (.1)		Lus10033988 [exp]	23.5	0.6198
AT5G52390			PAR1 protein (.1)		Lus10012788 [exp]	29.5	0.6395
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10020790 [exp]	42.0	0.5930
AT4G18650			transcription factor-related (...		Lus10007282 [exp]	57.4	0.5642
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10010666 [exp]	143.0	0.5645
AT2G39170			unknown protein		Lus10018298 [exp]	149.7	0.5488
AT1G07860			unknown protein		Lus10036143 [exp]	269.6	0.5051

Compare expression of checked genes

Lus10024040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.